Query= MSMg01no172_d12.b1 MSMg01no172_d12.b1 CHROMAT_FILE:
MSMg01no172_d12.b1 PHD_FILE: MSMg01no172_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:38 2005
(288 letters)
>mm_chr12_72867880_72868570
Length = 691
Score = 478 bits (247), Expect = e-139
Identities = 279/291 (95%), Gaps = 3/291 (1%)
Strand = Plus / Minus
Query: 1 cccaagaatcttggtactctatgggatattcagccaaaatgggacgtcactgcctacttc 60
|||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 491 cccaagaatcttggcaccctatgggatatccagccaaaatgggacgtcactggctacttc 432
Query: 61 aaacagctctgctgcgcctggctttagctgcaaagggctgtcctctcctgtgggctaaag 120
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 431 aaacagctctgctgcacctggctttagctgcaaagggctgtcctctcctgtgggctaacg 372
Query: 121 agcctcctgcaataaaccagttcagccagcttagactatcagagctagtccacaagcaca 180
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 371 agcctcctgcaataaaccagttcagccagcttaggctatcagagccagtccacaagcaca 312
Query: 181 ggccagaggcagggcagg---agaagaggctgttggcttgggtgaagaagagagctgcct 237
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggccagaggcagggcaggagaagaagaggctgttggcttgggtgaagaagagagctgcct 252
Query: 238 ttgaagggtgctctctccactgaaagactgccatgccttcaagccagggtc 288
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 251 ttgaagggtgctctccccactgaaagactgccatgccttcaagccagggtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 691
Length adjustment: 9
Effective length of query: 279
Effective length of database: 682
Effective search space: 190278
Effective search space used: 190278
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no172_d12.g1 MSMg01no172_d12.g1 CHROMAT_FILE:
MSMg01no172_d12.g1 PHD_FILE: MSMg01no172_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:38 2005
(269 letters)
>mm_chr12_72772050_72772719
Length = 670
Score = 455 bits (235), Expect = e-132
Identities = 247/251 (98%), Gaps = 1/251 (0%)
Strand = Plus / Plus
Query: 20 gggatggctttta-aggtaccatggcttccctctcttcatgggatggctttaacaggtac 78
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gggatggctttaacaggtaccatggcttccctctcttcatgggatggctttaacaggtac 279
Query: 79 catggcttccctctcttctttccaagatcagcatgatctcacatccagggcttcagctta 138
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 280 tatggcttccctctcttctttccaagatcagcatgatctcacatccggggcttcagctta 339
Query: 139 aacgctgccacgtgacagttactccatgtttgtgtgcttaaaactttggcccatctggaa 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aacgctgccacgtgacagttactccatgtttgtgtgcttaaaactttggcccatctggaa 399
Query: 199 ggtgtatgtgtgcccatgcctacacacgtgcttgtgtgtgtgtgtgagtgtgtgtatgag 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggtgtatgtgtgcccatgcctacacacgtgcttgtgtgtgtgtgtgagtgtgtgtatgag 459
Query: 259 tgtatgtgtgt 269
|||||||||||
Sbjct: 460 tgtatgtgtgt 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 670
Length adjustment: 9
Effective length of query: 260
Effective length of database: 661
Effective search space: 171860
Effective search space used: 171860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
