BAC Information

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BAC

Clone NameMSMg01-172F12
Chromosome12 (Build37)
Map Location 16,246,582 - 16,246,828
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172F12.T7 (MSMg01no172_f12.b1)MSMg01-172F12.TJ (MSMg01no172_f12.g1)
ACCAG368284AG368285
length722707
length of high quality
(start - end)
249 (69 - 317)280 (80 - 359)
definitionCHROMAT_FILE: MSMg01no172_f12.b1 PHD_FILE: MSMg01no172_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:47 2005CHROMAT_FILE: MSMg01no172_f12.g1 PHD_FILE: MSMg01no172_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAAGAGAATCCGCGGAAT
TCCTGTCTTTTCAGCAACACAGATTTACCTACCACCTGCACTCTGTAACC
CCCAAGAGCCAATGACCGCCAACGCAGTGTTAATGAGTCATAGGTTATGG
AGCATGTCTGCTGAGCTTCCTGATTAATTACACATTGCTTGTAGTATAAG
AATCGGTGATCTGGGAACATGCCTGATTTTCATGCTCATTGGACTAATTG
AAATTTATATAGGATAATATTATTAAACAAAAATGTAGTAAAATTTTAAA
TTTTCTTTCAGTCTATATATTGTGTAATTTCACTAAGGTTTAATGCACTG
TAATGCTTGTTTTAGACCCCTCTCGACCCTAAGAGCACTGGCTACTCTTC
TAGAAGACCTGGGCACTGCATTCATGATACTCAGATATACCTACTAATTA
TAATGTATAACCAATACTAATGGTGATCAGCTATGCAATATATTGATTCT
TGCATATACTGAACACTACCATTAGTATCATCATTATTGTTATTGATAGA
CTTCTTATCATGATGCCCTGCCTTGTCTTGAATGTGCTAGTTACTCTACA
ACGAACTTGACTTTCTGACCTTTCCCCTTTTCTCCATTATTCACGTTTCT
TATCTCTCCTCCCCCTTTTTCTATCTGTTTTTTTTTTTTATTCCCATCTC
CCTCCTTTTTTTTTTTTCCCCT
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAAATCAATCGGCTTCTG
CCTCTTGGGTGCTAGGATTAAAGCTGCGTGCTACCACCTTCAAGCAGGGA
ATTTTTTAAGGACATAAAGTTGGGAGAGGGACATGGTACAGATGGTCTGA
GAGGAGTCGGAGAGATGATATTGGAATGGAAATGAACAGATCTCATTGTG
TACATGTATGAAGCACTAAAAGAATAAATTACAAGATAGTTAAAACATTT
TAAGGCTCACCTAAACATGACTGTTATTTGTAATGGTATGGAACAACCTG
GAGGACAAGGTGTTTTGTGCACCACCCCCGCTCTGAAAGACAAACGTGTG
TTCTGATTTACACATGGATAGAGAAGTCCAGCCCAGAAATTAAATGGTGG
TTCCTAGGGCTAAGGGATGGAGAGCTAGGACATGAGTTAATAACATGGAT
TTCAGTTCCACAAGGGGAACATGCTGAGGGGAACAATTGCATGTTATGAT
GGCAGATAATAATGTACTTATACATGTGACATTATGAGAGGAGATTTCAA
GTATTAACATATAAAACAGATAAAGTAACACATATGTAATGGAATTTGAT
TGGTCATCCCACAAAACATAGGTATATCAGAATATCGTGTCTTCTGCCCC
AAGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_f12.b1 MSMg01no172_f12.b1 CHROMAT_FILE:
MSMg01no172_f12.b1 PHD_FILE: MSMg01no172_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:47 2005
         (249 letters)



>mm_chr12_16246382_16247030
          Length = 649

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagatttacctaccacctgcactctgtaacccccaagagccaatgaccgccaacgcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 447 acagatttacctaccacctgcactctgtaacccccaagagccaatgaccgggaacgcagt 388

                                                                       
Query: 61  gttaatgagtcataggttatggagcatgtctgctgagcttcctgattaattacacattgc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gttaatgagtcatagggtatggagcatgtctgctgagcttcctgattaattacacattgc 328

                                                                       
Query: 121 ttgtagtataagaatcggtgatctgggaacatgcctgattttcatgctcattggactaat 180
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 327 ttgtagtataagaatcggtgagctgggaacatgcctgattttcatgctcattggacaaat 268

                                                                       
Query: 181 tgaaatttatataggataatattattaaacaaaaatgtagtaaaattttaaattttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaaatttatataggataatattattaaacaaaaatgtagtaaaattttaaattttcttt 208

                  
Query: 241 cagtcta 247
           |||||||
Sbjct: 207 cagtcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)