BAC Information

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BAC

Clone NameMSMg01-174N12
Chromosome12 (Build37)
Map Location 35,733,996 - 35,871,429
singlet/doubletdoublet
Overlap geneSnx13
Upstream geneHdac9, 4921508M14Rik, Prps1l1
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174N12.T7 (MSMg01no174_n12.b1)MSMg01-174N12.TJ (MSMg01no174_n12.g1)
ACCAG370021AG370022
length737734
length of high quality
(start - end)		319 (43 - 361)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no174_n12.b1 PHD_FILE: MSMg01no174_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:48 2005CHROMAT_FILE: MSMg01no174_n12.g1 PHD_FILE: MSMg01no174_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,871,120 - 35,871,429)(35,733,996 - 35,734,280)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGGCAACACCTATAGGTACCTACCACTTTGTGAAAGATAAATTAAGG
AAAGCCTCATACTTGTGTCCCAAATTACTGTGCAAAAATGTATGCACCAA
TGTAAGTTTAAAAGAGGCAGTTACTTCCATTTCAGTTAGAATGTACTTGA
GGTAGAATGCAGAAAGCACTACCTCTAAGGAGGCAGGGGAAAGTTCAAAT
GGTACCTACAATCATGCAGTCAGTAACATGCTGGAAACTAAACACCAGAT
CTGGTTTCTAGTCCAACAGCATCACACATCCACCCAAACTACACTTGTCT
GGAGTGTTTTTTTTATTACCACCCCCCCACCAAATTCACTAATCAATCCC
CTCTGCTAACGAGCACCTGCAAAGGACAATAAACTTTTATTAGTTGGGCT
GAGACCCCATCCTTTCCTAACTACAGCTGCTATTCATTGTTCATGCAAGC
TGTCTCACCAAGTGAGCCAACATGCCTCAAGAGGAATCAAAATCAAAGTA
TATAGGAGTAAACTCTCCAGCTGACACAGGTTCTTATGACCCTGGTCACT
GGCTGATTGTGCATAAAAGGGTGTTCAGCATCATTAACCACCAGGGAAAG
GCAAAGCAAACCACAATGACCTCACACCTGTCAGATAGGTCATTGTCAAA
CGTTTACAGGCTACTGGGGGTTGTCGAGAAGGTATAN

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTACTTAAGAGTTTTAGCTTGTCATTT
TTTTATAAAGCCCCACCAACTCCCACTTTGAAATATTGTAGATACAAATG
ACTTTGTGTGTCTGCAAGTGATGCCTTACACCAGTCAGTGAGTCTTAGGA
CTTAGGGGATGTGATTGAATTGTTAGGTCTCAAATCTAATGTGATGCGCT
TAAGAAAGGTTTTTTTACTTTTTTTATTACTCATGTTTAGCAGGCATTTC
CCTGGTCAGAAGGCAGTGAGTTAGGGTAGGTGATATTGCCACTATTAGCT
GTGTGACTATTTTGATTGACAACCCGACAATAACTTGATTAAAAACCACA
GAGTAAGAGTCACACTTAAGCCTTCTTATTTGAAGTTGTGTGGTGTGTTG
TGACCTCCCACACAATGTAGACCCCTCAAACAGTTATTGGTGGAATAGTT
GACACTAGAAATCACATCTCCTGACTCCCTCCCTCTCCTCTTACCCCTTC
TTCCTTTTTCCTCCTTTCTCCCATCCCTGCCCTTTTTCTGTTGTTTCCAC
TTCTGAGATTGTCACTATGCAAGTCTGACATTGTCACTATGCTAGCCTAT
AAAGGAAGCAAAGTGGAGGTACACACATGATCATAATATCAACAATAATG
ATTCATATGAAAATACTTCACTTTTGCATTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_n12.b1 MSMg01no174_n12.b1 CHROMAT_FILE:
MSMg01no174_n12.b1 PHD_FILE: MSMg01no174_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:48 2005
         (319 letters)



>mm_chr12_35870916_35871634
          Length = 719

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggcaacacctataggtacctaccactttgtgaaagataaattaaggaaagcc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcttggcaacccctataggtacctaccactttgtgaaagataaattaaggaaagcc 455

                                                                       
Query: 65  tcatacttgtgtcccaaattactgtgcaaaaatgtatgcaccaatgtaagtttaaaagag 124
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 454 tcatacttgtgtcctaaattactgtgcaaaaatgtatgcaccaatgtaagttcaaaagag 395

                                                                       
Query: 125 gcagttacttccatttcagttagaatgtacttgaggtagaatgcagaaagcactacctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcagttacttccatttcagttagaatgtacttgaggtagaatgcagaaagcactacctct 335

                                                                       
Query: 185 aaggaggcaggggaaagttcaaatggtacctacaatcatgcagtcagtaacatgctggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaggaggcaggggaaagttcaaatggtacctacaatcatgcagtcagtaacatgctggaa 275

                                                                       
Query: 245 actaaacaccagatctggtttctagtccaacagcatcacacatccacccaaactacactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 actaaacaccagatctggtttctagtccaacagcatcacacatccacccaaactacactt 215

                     
Query: 305 gtctggagtg 314
           ||||||||||
Sbjct: 214 gtctggagtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no174_n12.g1 MSMg01no174_n12.g1 CHROMAT_FILE:
MSMg01no174_n12.g1 PHD_FILE: MSMg01no174_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:48 2005
         (288 letters)



>mm_chr12_35733796_35734483
          Length = 688

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacttaagagttttagcttgtcatttttttataaagccccaccaactcccactttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacttaagagttttagcttgtcatttttttataaagccccaccaactcccactttgaa 260

                                                                       
Query: 61  atattgtagatacaaatgactttgtgtgtctgcaagtgatgccttacaccagtcagtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattgtagatacaaatgactttgtgtgtctgcaagtgatgccttacaccagtcagtgag 320

                                                                       
Query: 121 tcttaggacttaggggatgtgattgaattgttaggtctcaaatctaatgtgatgcgctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttaggacttaggggatgtgattgaattgttaggtctcaaatctaatgtgatgcgctta 380

                                                                       
Query: 181 agaaaggtttttttactttttttattactcatgtttagcaggcatttccctggtcagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaggtttttttactttttttattactcatgtttagcaggcatttccctggtcagaag 440

                                                        
Query: 241 gcagtgagttagggtaggtgatattgccactattagctgtgtgac 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagtgagttagggtaggtgatattgccactattagctgtgtgac 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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