Query= MSMg01no175_a12.b1 MSMg01no175_a12.b1 CHROMAT_FILE:
MSMg01no175_a12.b1 PHD_FILE: MSMg01no175_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:01 2005
(247 letters)
>mm_chr12_57474242_57474887
Length = 646
Score = 385 bits (199), Expect = e-111
Identities = 238/263 (90%), Gaps = 21/263 (7%)
Strand = Plus / Minus
Query: 5 gaattctttggatttgcgctccatagaagttcattgctgacctgcgctcctgaactatga 64
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 gaattctttgga-ttgcgctccatagaagttcattgctgacctgcgctcctaaactatga 266
Query: 65 aacatgaatatgtgccctaaggagtagtttctttcaataaacagtaattatatggacagt 124
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacatgaatatgtgggctaaggagtagtttctttcaataaacagtaattatatggacagt 206
Query: 125 aagaaagaaagaaagaaagagagagagagagagagagagagagagagagagagagagaga 184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aagaaagaaagaaagaaagaaagagagagagagagagagagagagagagagagagagaga 146
Query: 185 gagagagagagaga----gagagagaaag----------------cagcttggagaagag 224
|||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 145 gagagagagagagaacgagagagagaaagaaagagagaaagaaagcagcttggagaagag 86
Query: 225 ggctttcagctccagagacatgg 247
|||||||||||||||||||||||
Sbjct: 85 ggctttcagctccagagacatgg 63
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space: 151606
Effective search space used: 151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no175_a12.g1 MSMg01no175_a12.g1 CHROMAT_FILE:
MSMg01no175_a12.g1 PHD_FILE: MSMg01no175_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:01 2005
(284 letters)
>mm_chr12_57328117_57328800
Length = 684
Score = 491 bits (254), Expect = e-143
Identities = 275/282 (97%), Gaps = 2/282 (0%)
Strand = Plus / Plus
Query: 1 ttctcctgaattatctagttt-tcatatttttttctctaaataaactgagtaaagagaat 59
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcctgaattatctagtttat-atatttttttctctaaataaactgagtaaagagaat 259
Query: 60 gatttaaggagagcaaagtgaaaaccgtggtatttcagttttcaaggtttaacagagaag 119
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 260 gatttaaggagagcaaagtgaaaaccgtggtatttcagttctcaaggcttaacagagaag 319
Query: 120 catcttaactaaacagagagcacaaactccccatttctgccctgagttatttctctcccc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 catcttaactaaacagagagcacaaactccccatttctgccctgagttatttctcttccc 379
Query: 180 atactaaacatgttttagtcttacttctctggcattctggacaaactgtcctattaatgg 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 380 atactaaacatgttttagtcttacttttctggcattctggacaaactgtcctattgatgg 439
Query: 240 ctgactgtcatcacagctgcctttgttgaatcctcaacctgg 281
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgactgtcatcacagctgcctttgttgaatcctcaacctgg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
