Query= MSMg01no176_g19.b1 MSMg01no176_g19.b1 CHROMAT_FILE:
MSMg01no176_g19.b1 PHD_FILE: MSMg01no176_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:09 2005
(600 letters)
>mm_chr12_96628397_96629395
Length = 999
Score = 955 bits (494), Expect = 0.0
Identities = 574/610 (94%), Gaps = 20/610 (3%)
Strand = Plus / Minus
Query: 1 tagacgtgaggtcaaactttcatcatgcttt---attaaggacttctattctattacaca 57
||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 621 tagacgtgaggtcaaactttcatcatg---taaaattaaggac-----ttctattacaca 570
Query: 58 ttcaggaaaccagacaggataatttcttgtacattagaccattaagaatatttgcttagt 117
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct: 569 ttcaggaaaccagacaggataagttcttgtacattagaccattaagaatatttacttggt 510
Query: 118 tagtttcatatgatgcaaagacaataggaaaatttcatagtggtatttcccatttagatc 177
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 509 tagtttcatataatgcaaagacaataggaaaatttcatagtggtgtttcccatttagatc 450
Query: 178 tttactcatactttactctcttttcattgactctgtcttttatcacaggaaagactatag 237
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 449 tttactcataatgtactctcttttcattgactctgtcttttatcacaggaaagactaaag 390
Query: 238 tgagaaatccttgtcagtttataccagaaaatattccatttacttattttcattattcct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgagaaatccttgtcagtttataccagaaaatattccatttacttattttcattattcct 330
Query: 298 aagtcatattataatgttatttaattaagacgccatatttgtagccagtgggaagtaatt 357
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 329 aagtcatattataatgttaaaaaattaagacgccatatttgtagccagtgggaaataatt 270
Query: 358 aaaatactgttaagctccaatatcacgccaggcagtggtggcacacgcttttaatctcag 417
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 269 -aaatactgttaagctccaatatcaagccaggcagtggtggcacacgcctttaatctcag 211
Query: 418 cacttgggaggcaaaggcaggcagatgtctgagttcaaggccagcctggtctgcagagtg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cacttgggaggcaaaggcaggcagatgtctgagttcaaggccagcctggtctgcagagtg 151
Query: 478 agttccaggacagccaggactacacagagaaatcctgtctgg-------aaaaaaaaaac 530
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 150 agttccaggacagccaggactacacagagaaatcctgtctgggaaaaaaaaaaaaaaaaa 91
Query: 531 aaagcaaaataaaacaaaaacaaacaaacaaataaacaaaggatccaatatcaagtataa 590
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 aaagc-aaattaaacaaaaacaaacaaacaaataaacaaaggatccaatatcaagtataa 32
Query: 591 actatcaagg 600
||||||||||
Sbjct: 31 actatcaagg 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 999
Length adjustment: 10
Effective length of query: 590
Effective length of database: 989
Effective search space: 583510
Effective search space used: 583510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_g19.g1 MSMg01no176_g19.g1 CHROMAT_FILE:
MSMg01no176_g19.g1 PHD_FILE: MSMg01no176_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:09 2005
(642 letters)
>mm_chr12_96454139_96455180
Length = 1042
Score = 1212 bits (627), Expect = 0.0
Identities = 636/639 (99%)
Strand = Plus / Plus
Query: 1 tgcaggaaaatggataaagaatggataaggtgcctaccaataaatatctttttaatcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcaggaaaatggataaagaatggataaggtgcctaccaataaatatctttttaatcaga 260
Query: 61 gataatgtttgcttgaaatgaaatgaattattagttgtttctgaaacctaggtatgtttt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataatatttgcttgaaatgaaatgaattattagttgtttctgaaacctaggtatgtttt 320
Query: 121 gttaaaatatgatcctcaataagaaataaataatttatatcattccagaaagtttttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaaaatatgatcctcaataagaaataaataatttatatcattccagaaagtttttctc 380
Query: 181 ccaagttcactatcaatccttccccgaaattgaagaacacatttacttttgatttttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagttcactatcaatccttccccgaaattgaagaacacatttacttttgatttttgtt 440
Query: 241 tgttttggttggatttttatttgcttttgttcatttgtttgagaagattctcactgtgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttttggttggatttttatttgcttttgttcatttgtttgagaagattctcactgtgtt 500
Query: 301 attcaggcatttgagaaattcatcatactcccagatgggccttccaagtcactggaaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcaggcatttgagaaattcatcatactcccagatgggccttccaagtcactggaaatt 560
Query: 361 tttataagtcaccatacttggctgcttgcttcatattctgaagatgaatttcacctgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttataagtcaccatacttggctgcttgcttcatattctgaagatgaatttcacctgttt 620
Query: 421 catttgtttatttggaattatgtatgaaccacaccttacacttggtctgagctcatattt 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 catttgtttatttggaattatgtatgaaccacatcttacacttggtctgagctcatattt 680
Query: 481 taccgagttctttaataataatcactatgttgcccttaaattattctgtagcttcccaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taccgagttctttaataataatcactatgttgcccttaaattattctgtagcttcccaca 740
Query: 541 acataaataaaccacattgttaatctgttgaactgttagaccttggaattctttccaatt 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acataaataacccacattgttaatctgttgaactgttagaccttggaattctttccaatt 800
Query: 601 ttgagttattattaattaagttgcaagaatgtttctgtg 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgagttattattaattaagttgcaagaatgtttctgtg 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
