BAC Information

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BAC

Clone NameMSMg01-177H13
Chromosome12 (Build37)
Map Location 110,025,141 - 110,025,587
singlet/doubletsinglet
Overlap genenone
Upstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164
Downstream geneYy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177H13.T7 (MSMg01no177_h13.b1)MSMg01-177H13.TJ (MSMg01no177_h13.g1)
ACCAG371852AG371853
length708717
length of high quality
(start - end)
468 (42 - 509)447 (77 - 523)
definitionCHROMAT_FILE: MSMg01no177_h13.b1 PHD_FILE: MSMg01no177_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:03 2005CHROMAT_FILE: MSMg01no177_h13.g1 PHD_FILE: MSMg01no177_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAGAGGATCCGCGG
AATTCAGAATGTACCGGCTCTAGACTAAAGAAGCCCTAGAATATTATAAA
CTGAACTTAGTGGGCATCTGGTGGAGCCCAGAAGACCAAAACCTGAAAGA
ACTGCAGGCCCGCACCATGGCTCAGTCGATATAGTACCTGCCATGCATGT
AGGATCTGAATTGTCCAGATCTCTGGCATCCATATAAAGGGTGGGTGTGG
CAGTATGCATCTGTAAGCCCACTTCAGGGGTTAAGGAGGTGTCACAGACC
CCTGCAGCTCACTGACCAACCATCCTGGCCAATGATGAGTTCCAGGGTCA
GAGAGGACCTTGTCTCAAAACTAAGATTGCCTGGCTCATAAAGTTTCAGA
GCCGAACAAGGACCCCCCCACGACCTGAGCTAGAGTCCGTTCTTGTGATA
TTCTGGGGAGAATGCATGTCTGTATTCTGCCCATGTCCTTAGACCTTGAA
TGAGGCTCAATTCAAAAGTAGTGAGCTTGCTAGGCCTGTAATTCTAGAAT
TCAGGACGTATAAGCAAATGGATCTTTGTGAGTTTGAGATCACCCTTAAC
TACAAAGGACATTTCATGGTAGCATAGACACTTCTTATGTGGCAGAGTCT
TTTTCTCTGCTTCCTTGTTGATTTTTTTGCCGCATCATCTTGCGTATTCC
ACCCTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGCTTCCTACTTGAGGGAAAT
TGAAGGGGCCGGACATGGTGGCTAATCTTGGCTACATAACCATGCTCATT
TCTTAAAATAAAATTAGATGAAAAGGCTCAGAGTTCATCTCCACAGATGC
TAGCAGTTTCCACTTCCCTCAAGAATTGGTGAGCAGGGAGTTCCTTTCCT
GCCAGCTCTCCTGACTCACTTGGTCTGCCTGGCTTTAGCAGTCAGTCACC
TGTATGCTGCCTATTCTCAGCTCTGTCTGGTTTGGGTGAACTCCAGGGCT
CTGGGTCCCATTGGCTCCTCCCATGAGCCTGCCTCCTCATCTCAGCCTCA
CCATCTTCACCTGCCCCACCTCAGCACTTTGACTCAATGCTTGCCCCCAG
TTGCCCACAACCAAACTCTGTAAGTCACCTGTCTTCTTCGGGTTTTCTGT
GACTGCGATAAATGCTGTGACCAAAATCAGCTCCAGGAGGAAAGGGTTTC
TTTAGCTTACACTTATACCTCACAGTTCATAAAGTCAGAGCAGGAACTAA
TTGTTTGTAATTCTAGCAGATATTCCTAAACAATGTGCTCTTACTGCCCT
GCTTTCTCTTGTCATTGCTCAACTTCGCTTATTACCAGTCCCCGATCAAC
TTGTTTTCCCCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_h13.g1 MSMg01no177_h13.g1 CHROMAT_FILE:
MSMg01no177_h13.g1 PHD_FILE: MSMg01no177_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:03 2005
         (447 letters)



>mm_chr12_110024941_110025787
          Length = 847

 Score =  818 bits (423), Expect = 0.0
 Identities = 441/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggcttcctacttgagggaaattgaaggggccggacatggtggctaatcttggctaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 catggcttcctacttgagggaaattgaaggggccggacatggtggctaatcttggctaca 588

                                                                       
Query: 61  taaccatgctcatttcttaaaataaaattagatgaaaaggctcagagttcatctccacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 taaccatgctcatttcttaaaataaaattagatgaaaaggctcagagttcatctccacag 528

                                                                       
Query: 121 atgctagcagtttccacttccctcaagaattggtgagcagggagttcctttcctgccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 atgctagcagtttccacttccctcaagaattggtgagcagggagttcctttcctgccagc 468

                                                                       
Query: 181 tctcctgactcacttggtctgcctggctttagcagtcagtcacctgtatgctgcctattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctcctgactcacttggtctgcctggctttagcagtcagtcacctgtatgctgcctattc 408

                                                                       
Query: 241 tcagctctgtctggtttgggtgaactccagggctctgggtcccattggctcctcccatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcagctctgtctggtttgggtgaactccagggctctgggtcccattggctcctcccatga 348

                                                                       
Query: 301 gcctgcctcctcatctcagcctcaccatcttcacctgccccacctcagcactttgactca 360
           ||||||||||||||||||||||||||||||||||||||  || ||||||||||||||| |
Sbjct: 347 gcctgcctcctcatctcagcctcaccatcttcacctgcttcatctcagcactttgactta 288

                                                                       
Query: 361 atgcttgcccccagttgcccacaaccaaactctgtaagtcacctgtcttcttcgggtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atgcttgcccccagttgcccacaaccaaactctgtaagtcacctgtcttcttcgggtttt 228

                                      
Query: 421 ctgtgactgcgataaatgctgtgacca 447
           ||||| ||| |||||||||||||||||
Sbjct: 227 ctgtgtctgtgataaatgctgtgacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)