BAC Information

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BAC

Clone NameMSMg01-177I13
Chromosome12 (Build37)
Map Location 108,682,864 - 108,846,331
singlet/doubletdoublet
Overlap geneLOC100041251, LOC100040497
Upstream gene1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
Downstream geneLOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177I13.T7 (MSMg01no177_i13.b1)MSMg01-177I13.TJ (MSMg01no177_i13.g1)
ACCAG371895AG371896
length717714
length of high quality
(start - end)		492 (48 - 539)490 (78 - 567)
definitionCHROMAT_FILE: MSMg01no177_i13.b1 PHD_FILE: MSMg01no177_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:07 2005CHROMAT_FILE: MSMg01no177_i13.g1 PHD_FILE: MSMg01no177_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,682,864 - 108,683,352)(108,845,842 - 108,846,331)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAATGCACTTTTTAAGAGCATCCAACAGGAAGGGTAAAGCGTG
TGGCTTTACTGCAATTTATGAGATGATGGAACTGGGCTTTCAGGGTGAAA
GAGCCAGAACGTGATTCCAGGCATGGCCCTTTTTCGGTGCTCATGGCTTT
CTCGTGTAGCTGCTGGTGATGAATTAGCTGGCATAAACAATGGTGGCACA
GAGCCACTGTGGCCTTCTTTGTGCTCCTTTCTCATTGTGGGATGTGAGGA
GAAAGCCCCATTCACTTCTACCCATCCCCTTCATGTCTCATGCTGTTAAG
CTCCCTTCTGACACGGAGCCAGCCTCGCTCTTTTGTTTGTGAGGCACTTG
ATTCTGCAATGACCTTGTGCATAGGGTTTCCCTTTAAAATGAATGCCTCT
AGGCATAAAGACTGAATTTTTTGGAGCCATACTCTACCCAAGTAACATAG
GAGGGTGTCTCAGAGAATAAGATATTCTAGTTGAGTGTATAAGAGCCATG
GACAGCACTCCAGGTAAAAGGAACAATGGACAGTGTATGGTCAGTCTCAC
CGCACACATAGATGAGCATGTGTGTGTTTATGTGTGTGCCCATGTTGTGC
TGTGTTTCAGTCTATGAGGACCTTTGTTTAATAAATCCTAACCTTTGTAC
CACCTGTGTAAGCGGCG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATAAAGGAGTAGCAGGCACA
CTTGGAAGCAGAGGCACCCAAGAGCCAGAATTCCAGGGCCTCTCACCTGG
AGAGGAATGGATAGAGCACCTCCAAGAAAACAGAGAAAATGGAAAACCCT
TATTGGCCTCCCACCCCAGTGCAGGCATATCTGAGTCCTCCTCAGAGGCC
CAAGGTGAGTATTTAAGTAGCCACAAGAAGTGAAAGAGCTGCTAGTAAGT
GATAAAATTTTAAGTTGAACTGATCCCATCAGTTTGTATAGATATTTTAA
ATCTTAAAATAGAGATCACCAATTGTTTTTATGGAAGAAAGACCAATATT
TGAATTTTTTGATGAAAGTACATGCATCAAACAGGCATAGTAGGTCTAGG
ACCAAAAATCAGAAGCAGTTTGGACCTAATTTTAGGTTTTTCCAGCTCAA
ATGTACACTTCCAAGTTTTAAATGCCATTACCCAATCTCTCATTTTGGTG
GATATTCATGGCTTCCATACAACATCAACTACATTGTCAGCTGTATGCCC
AGACCTCTCATCTAACTGATAAGAGAAGACTTTCTATTTCAGGCACATAT
GAAGGTAAGTTTTTCTGCGCATAACAGGGTCTTGGACTGCACTTTCCGAT
CCACAGTCCTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_i13.b1 MSMg01no177_i13.b1 CHROMAT_FILE:
MSMg01no177_i13.b1 PHD_FILE: MSMg01no177_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:07 2005
         (492 letters)



>mm_chr12_108682661_108683552
          Length = 892

 Score =  899 bits (465), Expect = 0.0
 Identities = 483/489 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaatgcactttttaagagcatccaacaggaagggtaaagcgtgtggctttact 63
           |||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 ggaattctaaggaactttttaagagcatccaacaggaagggtaaagcatgtggctttact 263

                                                                       
Query: 64  gcaatttatgagatgatggaactgggctttcagggtgaaagagccagaacgtgattccag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaatttatgagatgatggaactgggctttcagggtgaaagagccagaacgtgattccag 323

                                                                       
Query: 124 gcatggccctttttcggtgctcatggctttctcgtgtagctgctggtgatgaattagctg 183
           ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcatggcccttcttcggtgcgcacggctttctcgtgtagctgctggtgatgaattagctg 383

                                                                       
Query: 184 gcataaacaatggtggcacagagccactgtggccttctttgtgctcctttctcattgtgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcataaacaatggtggcacagagccactgtggccttctttgtgctcctttctcattgtgg 443

                                                                       
Query: 244 gatgtgaggagaaagccccattcacttctacccatccccttcatgtctcatgctgttaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatgtgaggagaaagccccattcacttctacccatccccttcatgtctcatgctgttaag 503

                                                                       
Query: 304 ctcccttctgacacggagccagcctcgctcttttgtttgtgaggcacttgattctgcaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcccttctgacacggagccagcctcgctcttttgtttgtgaggcacttgattctgcaat 563

                                                                       
Query: 364 gaccttgtgcatagggtttccctttaaaatgaatgcctctaggcataaagactgaatttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaccttgtgcatagggtttccctttaaaatgaatgcctctaggcataaagactgaatttt 623

                                                                       
Query: 424 ttggagccatactctacccaagtaacataggagggtgtctcagagaataagatattctag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttggagccatactctacccaagtaacataggagggtgtctcagagaataagatattctag 683

                    
Query: 484 ttgagtgta 492
           |||||||||
Sbjct: 684 ttgagtgta 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no177_i13.g1 MSMg01no177_i13.g1 CHROMAT_FILE:
MSMg01no177_i13.g1 PHD_FILE: MSMg01no177_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:07 2005
         (490 letters)



>mm_chr12_108845642_108846531
          Length = 890

 Score =  909 bits (470), Expect = 0.0
 Identities = 485/490 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaataaaggagtagcaggcacacttggaagcagaggcacccaagagccagaattccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agaataaaggagtagcaggcacacttggaagcagaggcacccaagagccagaattccagg 631

                                                                       
Query: 61  gcctctcacctggagaggaatggatagagcacctccaagaaaacagagaaaatggaaaac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 630 gcctctcacctggagaggaatggatagagcacctccaagaaaacagagaaaacggaaaac 571

                                                                       
Query: 121 ccttattggcctcccaccccagtgcaggcatatctgagtcctcctcagaggcccaaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ccttattggcctcccaccccagtgcaggcatatctgagtcctcctcagaggcccaaggtg 511

                                                                       
Query: 181 agtatttaagtagccacaagaagtgaaagagctgctagtaagtgataaaattttaagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 510 agtatttaagtagccacaagaagtgaaagagctgctagtaagtgataaaattttaggttg 451

                                                                       
Query: 241 aactgatcccatcagtttgtatagatattttaaatcttaaaatagagatcaccaattgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aactgatcccatcagtttgtatagatattttaaatcttaaaatagagatcaccaattgtt 391

                                                                       
Query: 301 tttatggaagaaagaccaatatttgaattttttgatgaaagtacatgcatcaaacaggca 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttatggaagaaagaccaatttttgaattttttgatgaaagtacatgcatcaaacaggca 331

                                                                       
Query: 361 tagtaggtctaggaccaaaaatcagaagcagtttggacctaattttaggtttttccagct 420
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 330 tagtaggtctaggaccaaaaatcagaagcagtttgaacctacttttaggtttttccagct 271

                                                                       
Query: 421 caaatgtacacttccaagttttaaatgccattacccaatctctcattttggtggatattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caaatgtacacttccaagttttaaatgccattacccaatctctcattttggtggatattc 211

                     
Query: 481 atggcttcca 490
           ||||||||||
Sbjct: 210 atggcttcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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