BAC Information

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BAC

Clone NameMSMg01-178C16
Chromosome12 (Build37)
Map Location 67,494,437 - 67,495,074
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040700, EG238217
Downstream geneMdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178C16.T7 (MSMg01no178_c16.b1)MSMg01-178C16.TJ (MSMg01no178_c16.g1)
ACCAG372334AG372335
length711713
length of high quality
(start - end)
661 (46 - 706)638 (74 - 711)
definitionCHROMAT_FILE: MSMg01no178_c16.b1 PHD_FILE: MSMg01no178_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:53 2005CHROMAT_FILE: MSMg01no178_c16.g1 PHD_FILE: MSMg01no178_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCTTGATCCTATACACTTCTTCAAAAGGCTAATGGCTATGGC
AGACATAGGCCCTAGGATAAAATCTGCTATCATTACTTGACTAAATATGG
CCATGTTGTAAAACTGCTTTCTAAATACTTGTATTTATGTGTCGGGAGGA
ATTTCTTTTCTGATACAATTTGCAAAACACATGAAACTGAAGAAGAACAA
AGACCAAAATGTGGACACTTTGCCCCTTCTTAGAATTGGAAACAATCACC
CATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGA
CCATTTAGAGACTGCCATATCCAGAGATCCATCTCATAATTAGCCTCCAA
ATGATGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGA
TATAGCTATCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACATAAGTA
GATGCTCACGGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAG
CTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCA
ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT
ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT
GGACATGCAAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCTCTGCGAAGAGGGAGTAGCTTTAT
ACTCTTGAGACAGGGTAGCCATATATCTCAGCACTGTGAAATAAAATGAC
TTAGAATATCTTTTAAATAAGAAATCAGATATATTAATTTACTGAGAAAT
TTATTGTACCATAAAGTAATTTCTCTTGAGAATTTTTCTGTAAACTTAAA
AATAATTTCTGTATTGCTTTTATTTCAAGCTAAACAAGTTATTTGTTGAC
TTTGAGATTAAGAGAGAACTAATCCAAGAAAATCTGGGATGCATTTTAAA
TCTGAAAAACTTCTACATAAAGTATTTTACTACAAAATAGAATGAGATAA
ATTCTTTGTCTAGTTATTATGTCCTTAGAGTTACACCTAAAACAAAATAA
CTGTTAAGTTCTGTTTCTTATGATATATTTTTCAGCCTTCAAAGAGTTTG
TGTTTAGTTAAACCAAGGGAAATTTTACTTCCTCTGATGTTTGAGTTGAG
TAAAACTGTCACCATGTCTCAATATATTAGAGTATGGTTCAAATCATCAA
ATGAAATTTTAATACTTTCAATAAACGCAGCTACACTAAGCCTTCCCTCT
CTTATCTCTAAAATGAATCTTATGATTTATTTTATACACATGGGACAGGG
GCTGTTTTTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_c16.g1 MSMg01no178_c16.g1 CHROMAT_FILE:
MSMg01no178_c16.g1 PHD_FILE: MSMg01no178_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:54 2005
         (638 letters)



>mm_chr12_67494237_67495274
          Length = 1038

 Score = 1226 bits (634), Expect = 0.0
 Identities = 637/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctctgcgaagagggagtagctttatactcttgagacagggtagccatatatctcagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgctctgcgaagagggagtagctttatactcttgagacagggtagccatatatctcagca 779

                                                                       
Query: 61  ctgtgaaataaaatgacttagaatatcttttaaataagaaatcagatatattaatttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ctgtgaaataaaatgacttagaatatcttttaaataagaaatcagatatattaatttact 719

                                                                       
Query: 121 gagaaatttattgtaccataaagtaatttctcttgagaatttttctgtaaacttaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gagaaatttattgtaccataaagtaatttctcttgagaatttttctgtaaacttaaaaat 659

                                                                       
Query: 181 aatttctgtattgcttttatttcaagctaaacaagttatttgttgactttgagattaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aatttctgtattgcttttatttcaagctaaacaagttatttgttgactttgagattaaga 599

                                                                       
Query: 241 gagaactaatccaagaaaatctgggatgcattttaaatctgaaaaacttctacataaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gagaactaatccaagaaaatctgggatgcattttaaatctgaaaaacttctacataaagt 539

                                                                       
Query: 301 attttactacaaaatagaatgagataaattctttgtctagttattatgtccttagagtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 attttactacaaaatagaatgagataaattctttgtctagttattatgtccttagagtta 479

                                                                       
Query: 361 cacctaaaacaaaataactgttaagttctgtttcttatgatatatttttcagccttcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cacctaaaacaaaataactgttaagttctgtttcttatgatatatttttcagccttcaaa 419

                                                                       
Query: 421 gagtttgtgtttagttaaaccaagggaaattttacttcctctgatgtttgagttgagtaa 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gagtttgtgtttagctaaaccaagggaaattttacttcctctgatgtttgagttgagtaa 359

                                                                       
Query: 481 aactgtcaccatgtctcaatatattagagtatggttcaaatcatcaaatgaaattttaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aactgtcaccatgtctcaatatattagagtatggttcaaatcatcaaatgaaattttaat 299

                                                                       
Query: 541 actttcaataaacgcagctacactaagccttccctctcttatctctaaaatgaatcttat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 actttcaataaacgcagctacactaagccttccctctcttatctctaaaatgaatcttat 239

                                                 
Query: 601 gatttattttatacacatgggacaggggctgtttttgt 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gatttattttatacacatgggacaggggctgtttttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)