BAC Information

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BAC

Clone NameMSMg01-179D20
Chromosome12 (Build37)
Map Location 46,564,364 - 46,564,719
singlet/doubletsinglet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179D20.T7 (MSMg01no179_d20.b1)MSMg01-179D20.TJ (MSMg01no179_d20.g1)
ACCAG373087AG373088
length734748
length of high quality
(start - end)		324 (35 - 358)348 (65 - 412)
definitionCHROMAT_FILE: MSMg01no179_d20.b1 PHD_FILE: MSMg01no179_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:12 2005CHROMAT_FILE: MSMg01no179_d20.g1 PHD_FILE: MSMg01no179_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAAG
TTCTTAGGCACATGGATGGAACTAGAAGATATAATCCCGAGTGAGGTAAC
CCAGTCACAAAAGAACACACATGGTGTTCACTCACTAATAAGTGGATATT
AGCCTAAAAGATCGGAATACTCAAGATAGAATTTACAGACTACATGAAGC
TCAATAAGAAGGAAGACCAAAGTGGATTCTTTGGTATTTCTTAGAAGGGG
GAACAAAATACCCATGAGAGGAGTTACAGAGACAAAGTGTGGAGTAGACT
GAAGGAAAGGCCATCAAGAGATTGCCTCACCTGGGGATCTATCCCACATA
TAGACATATTTACCCAGATACTATCGTGAATGCCAAGAAGTACATGTTGA
CAGGAGCCTGGCGCACCTGTCTCCTGAGAGGTCCTGCCAGTGCCTGACAA
ATACAGAAGTGGATGCTCACAGCCATCCATTGGACTTAGCACAGGGTCCC
CAACAGAGCAGCTGGAGAAAGAATCCAAGGAGCTGAAGAGGTTTGCAGCC
CCATAGGAGGAAGAAAAATATGAATCAACCAGTAACCCCAGTGCTCCCAG
AGACTAAACCATCAGCCAAAGAGTACACATGGAGGGACTCACAGCTCCAG
CAGTATGTGTAGCAGATGATGCCTCTTTCATCAATGAGAAAAGAACCCTT
GGTCCTGTGAAGGCTTGATGCCCCAGTGTACGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAATTAATCTTAAAGTGCTCACCTATAGGACTTTT
GAAGAGGTAATATTACGCCTCAAAAAAAAAAAACCCTACATTTTAAGAAA
ATCAGTATGATTAGAGTCATTAGGAGGCTTACAGTAAATTCCAAAGGTGA
GGCTGGCAAATGAATGAATATATCCCTAATTTACATATTCTGTGAAATTT
AAGCAGAAAGTAAATAAGTCAAAGATATCCCAAGCCAAATAAATAAAGGA
AAATATACTAAGCTAAGCAAAATAAAATAAATTGTGTGTATAAAAATGTG
TGTTTGTATGCACATGTTTCTATTTTATATGCTCTGTGTGTGTGTGTGTG
TGTGTGTGTGTGCGCCCCGCGAAAAAAAAAACATATCCTCCGGGGGCCAC
CTCTCTCTTCATCTCCCCCCTCTCTCCCTTATTCCTTACTTTCATTCTTC
TTATCCTCATTTATTCCTTTGATCCCCGTTATATTTCGCTCATTTTTCCA
TCATTTTACCTTTCCATTTACTTATTACCGCCTCCTTTTCCATTCTTTAC
CCCTTCGATAAACCTATTTATACTCCGGCGCTTTTTTTATCTCACAACTC
CCTCTAATTAACTTTTTATATACTTTGCTTTCTCCTTCTTCTCCTCTATT
TTATTTTTCCTTCTTTTTATACGACCATTCTACACCAATATCTCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_d20.g1 MSMg01no179_d20.g1 CHROMAT_FILE:
MSMg01no179_d20.g1 PHD_FILE: MSMg01no179_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:12 2005
         (348 letters)



>mm_chr12_46564134_46564881
          Length = 748

 Score =  571 bits (295), Expect = e-167
 Identities = 337/359 (93%), Gaps = 16/359 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaattaatcttaaagtgctcacctataggacttttgaagaggtaatattacgcctc--- 57
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||   
Sbjct: 586 agaattaatcttaaagtgctcatctataggacttttgaagaggtaatattacccctccaa 527

                                                                       
Query: 58  -------aaaaaaaaaaaaccctacattttaagaaaatcagtatgattagagtcattagg 110
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaaaaaaaaaaaaaaaaaaccctacattttaagaaaatcagtatgattagagtcattagg 467

                                                                       
Query: 111 aggcttacagtaaattccaaaggtgaggctggc-aaatgaatgaatatatccctaattta 169
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 466 aggcttacagtaaattccaaaggtgaggctggcaaaatgaatgaatatatccctaattta 407

                                                                       
Query: 170 catattctgtgaaatttaagcagaaagtaaataagtcaaagatatcccaa--gccaaata 227
           || |||||||||||||||||||||||||||||||||||||||||||||||  |   ||||
Sbjct: 406 cacattctgtgaaatttaagcagaaagtaaataagtcaaagatatcccaaggg---aata 350

                                                                       
Query: 228 aataaaggaaaatatactaagctaagcaaaataaaataaattgtgtgtataaaaatgtgt 287
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 349 aataaaggaaaatatactaagctaagcaaaataaaataaactgtgtgtataaaaatgtgt 290

                                                                      
Query: 288 gtttgtatgcacatgtttctattttatatgctctgtgtgtgtgtgtgtgtgtgtgtgtg 346
           |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 289 gtttgtatgcacatgtttgtattttatatgctgtgtgtgtgtgtgtgtgtgtgtgtgtg 231


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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