XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGAC
CACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATT
TAGGATCGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTATGTCTTA
TTGACAGTGTATTTTTCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCA
TTTTTCGATTCTCGATCTTACAGCAGAAGCCATTGCTGTTCTTTTCAGGA
ATTTTTCCCCTGTGTCCATGTCTTTGAGACTTTTCCCCACTTTCTCCTCT
ATAAGTTTCACTGTCTCTGGTTTTATGTGGAGTTCTTTGATCCATTTACT
TTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATTTTTCTAC
ATGTTAGCTGCCAGTTGTGCCAGCACCATTTGTCGAAAATACTGTCTTTT
TTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGG
TGTGTAGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGT
CTGTTGCTATACCAGCTTTGTTTTTTCTTTCTTTCTTCTTTTTTTTTTTT
TTTTATCACAATTGCTCTGTAGCACAGCTTAATGTCAGGCATGATGATTC
CCCCAGAGGTTCTTTTATCATTGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACAGCTATTGCTACAACCCTTTGCATTCATATTCC
AGGATTATGACCTGTAAAATATTCAAGCTGATAAGAACCCCTAGAAACAA
TCAAGTCTAACCTCATATTATAAATTGGTAAGCTGCAAGTAAGAGGAGAA
AAACAAAACAGAACAAAACAATACTGGGTCAGAGAAGAACTATAGTACTG
TGATGTCTAGATATACCTGCCTTCAAACTCTCAGCCTAGTGATGTCTTTT
AAATGAGACCTAACTTTCTGTCTTTGTAACCAAGCTAGATAATAATAATA
ATAATAATAATAAACCATTGAGATGTAGTATTAACAATTAAGTCGGTCTT
GACCTCGATACTCTTTGAAGAGTCATTGTTGGTCTTTTCTTAGAGGTTTC
TAGAAAAACTCATAACACTCTATTCGTTATGACCCTCACTTAAGACAAGT
ATCAATATTACCATGAAGGGAGTTTGGGAAAGAGTACTTGCCATTATCCA
GTGTTGGCTAAGATTAAAGAGTCATAACTGTATCAGGCAGAAAGGAAATT
TTAATATCTCGCGTGATGTGGGGCACTGAACTGTGCACAGACAGCCTGGT
TCCGAGAGATCTGGTGGTCAGTGACTTCTGCCTTCATGGGATGGTAGGAA
TTTGGCCATGCCTCCTGGGCCCCN

Query= MSMg01no180_d09.g1 MSMg01no180_d09.g1 CHROMAT_FILE:
MSMg01no180_d09.g1 PHD_FILE: MSMg01no180_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:24 2005
         (608 letters)



>mm_chr12_9926170_9927177
          Length = 1008

 Score = 1098 bits (568), Expect = 0.0
 Identities = 597/608 (98%), Gaps = 3/608 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaaatattcaagctgataagaacccctagaaacaatcaagtctaacctcatattata 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 952 tgtaaaatattcaagctgataagaacccctagaaacaatcaggtctaacctcttattata 893

                                                                       
Query: 61  aattggtaagctgcaagtaagaggagaaaaacaaaacagaacaaaacaatactgggtcag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 892 aattggtaagctgcaagtaagagaagaaaaacaaaacagaacaaaacaatactgggtcag 833

                                                                       
Query: 121 agaagaactatagtactgtgatgtctagatatacctgccttcaaactctcagcctagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 agaagaactatagtactgtgatgtctagatatacctgccttcaaactctcagcctagtga 773

                                                                       
Query: 181 tgtcttttaaatgagacctaactttctgtctttgtaaccaagctagataataataataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 772 tgtcttttaaatgagacctaactttctgtctttgtaaccaagctag---ataataataat 716

                                                                       
Query: 241 aataataataaaccattgagatgtagtattaacaattaagtcggtcttgacctcgatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aataataataaaccattgagatgtagtattaacaattaagtcggtcttgacctcgatact 656

                                                                       
Query: 301 ctttgaagagtcattgttggtcttttcttagaggtttctagaaaaactcataacactcta 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ctttgaagagtcattgttgctcttttcttagaggtttctagaaaaactcataacactcta 596

                                                                       
Query: 361 ttcgttatgaccctcacttaagacaagtatcaatattaccatgaagggagtttgggaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttcgttatgaccctcacttaagacaagtatcaatattaccatgaagggagtttgggaaag 536

                                                                       
Query: 421 agtacttgccattatccagtgttggctaagattaaagagtcataactgtatcaggcagaa 480
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 535 agtacttgccatgatccagtgttggctaagattaaagagtcataattgtatcaggcagaa 476

                                                                       
Query: 481 aggaaattttaatatctcgcgtgatgtggggcactgaactgtgcacagacagcctggttc 540
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aggaaattttaatacctcgtgtgatgtggggcactgaactgtgcacagacagcctggttc 416

                                                                       
Query: 541 cgagagatctggtggtcagtgacttctgccttcatgggatggtaggaatttggccatgcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cgagagatctggtggtcagtgacttctgccttcatgggatggtaggaatttggccatgcc 356

                   
Query: 601 tcctgggc 608
           ||||||||
Sbjct: 355 tcctgggc 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)