BAC Information

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BAC

Clone NameMSMg01-182G19
Chromosome12 (Build37)
Map Location 58,874,312 - 58,874,867
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182G19.T7 (MSMg01no182_g19.b1)MSMg01-182G19.TJ (MSMg01no182_g19.g1)
ACCAG375311AG375312
length735736
length of high quality
(start - end)
564 (46 - 609)---
definitionCHROMAT_FILE: MSMg01no182_g19.b1 PHD_FILE: MSMg01no182_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:10 2005CHROMAT_FILE: MSMg01no182_g19.g1 PHD_FILE: MSMg01no182_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGAAGATGCACAGGACAGCTCATCCTCTCCTCATCGAGGTCCA
TATCCCACACCCAACAGAGACAGACCCATGAGTATAATTCCCCTGCCGTG
CCTGGTATCTGTGGTGGACAATTCTAGAGTACCCATCGGCTTTGCAGCAG
GATCTTTGAGGCCTGCACCGAACTGAGCGAACTCAACATCCCTTCTGCCT
GAACCTGCTTTCCTTATGCTAGGCATAAAAGCTTTAAGTCTGTGCCTTGG
AATGGGTCCCAGAGAATCCAATCCAAGGTAGAATCCAATCATGTGACAGA
ACAAGAGATGGAAGATAAAGGGGCCAATTAATGTGGATCAATACATGACT
GATGTTTTCCCTTCCCCACCACACTAGTGGCAGCAAACCAGAAGTGTCAG
CAGAGGACATCAGTGACCTCAGGCCAAGGGTCCCCTAGCTCCTGCTCACT
GTGGTCAGCTCAGGCTGTTAGCCCCTTGCCAGGTCTGGCTACCATTTTCA
TCTTAGAAAGATGACAGGAAGGAGCCGTGATGGGCCTTGTCAGGGTAGAG
TCCAGCAGGAGACCAGCGTTCAAACCTCAGAGACCATGTGAGGACAGGAG
AAAACACCTCACAAAGTCACTTCTGACCTCCCCTAGGAGGCCATGGCACG
CACGCCAGCCTCCCATCTCCACCTGTTGCAAAACN
AACCACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTCTAGCTTTGTACCC
AATATTTTAATTAGGTTATTTGGGGTTTTGGAGATCAACTTCTTGAGNTC
CGGATACATTCCGCTATTAGCCCTCTGCCAGATGTCGGGTTAGTGAACAT
TGAGACAAAGAAAAACCCTCCGGNGNCAANNTCCTNNGGNGCGGNNGCGC
CNTGNNNGNNNNGGGGCGGNNNGGGGGCGGGCTGNGNNNCANNCGGCNNT
CGGGGGANGGATTTTTTTTTTTTTCTGCNGCGTCAGNNTNCCGACATACT
TCNGCGCCTTTGGCCCCCCACAGAATATAGGCCGATTGAGCGTTTTTTCT
CTTGCTTTTTTTCCCCCCCTCTTTTCAAAAAAAACNANCCNNCACACTAT
ACCCCTCTCCACATTTTAACCCTCTATCTTCGATCCACCTCCCACGGGGN
GTGGGGGTCCCTACGGGCCCTCTTCTCGTCTCANCATATATGTATTTGTA
TTTCACTCGCACATCTTTCTTTTTTACCCCCATAAAACACAAACCTATCT
TCTTACCCGCCCCTCTTACACTCTTCCTATATCTTTTTTTCTTTCCGTCG
TACCTTGATTTCCATACGAGTCCGACGAGCTGTCCCTGTTCTNACTTCTG
GAGGAATTCTATTAAGACCCTTTTGTATCCCGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_g19.b1 MSMg01no182_g19.b1 CHROMAT_FILE:
MSMg01no182_g19.b1 PHD_FILE: MSMg01no182_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:10 2005
         (564 letters)



>mm_chr12_58874108_58875071
          Length = 964

 Score = 1029 bits (532), Expect = 0.0
 Identities = 550/556 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgaagatgcacaggacagctcatcctctcctcatcgaggtccatatcccaca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gaattctgtgaaggtgcacaggacagctcatcctctcctcatcgaggtccatatcccaca 701

                                                                       
Query: 65  cccaacagagacagacccatgagtataattcccctgccgtgcctggtatctgtggtggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cccaacagagacagacccatgagtataattcccctgccgtgcctggtatctgtggtggac 641

                                                                       
Query: 125 aattctagagtacccatcggctttgcagcaggatctttgaggcctgcaccgaactgagcg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 640 aattctagagtacccatcggctttgcagcaggatctttgaggcctgcactgaactgagcg 581

                                                                       
Query: 185 aactcaacatcccttctgcctgaacctgctttccttatgctaggcataaaagctttaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aactcaacatcccttctgcctgaacctgctttccttatgctaggcataaaagctttaagt 521

                                                                       
Query: 245 ctgtgccttggaatgggtcccagagaatccaatccaaggtagaatccaatcatgtgacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctgtgccttggaatgggtcccagagaatccaatccaaggtagaatccaatcatgtgacag 461

                                                                       
Query: 305 aacaagagatggaagataaaggggccaattaatgtggatcaatacatgactgatgttttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aacaagagatggaagataaaggggccaattaatgtggatcaatacatgactgatgttttc 401

                                                                       
Query: 365 ccttccccaccacactagtggcagcaaaccagaagtgtcagcagaggacatcagtgacct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ccttccccaccacactagtggcagcaaaccagaagtgtcagcagaggacatcagtgacct 341

                                                                       
Query: 425 caggccaagggtcccctagctcctgctcactgtggtcagctcaggctgttagccccttgc 484
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 340 caggccaagggttccctagctcctgctcactgtgatcagctcaggctgttagccccttgc 281

                                                                       
Query: 485 caggtctggctaccattttcatcttagaaagatgacaggaaggagccgtgatgggccttg 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 caggtctggctagcattttcatcttagaaagatgacaggaaggagccgtgatgggccttg 221

                           
Query: 545 tcagggtagagtccag 560
           |||||| |||||||||
Sbjct: 220 tcagggcagagtccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)