BAC Information

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BAC

Clone NameMSMg01-182L08
Chromosome12 (Build37)
Map Location 81,341,648 - 81,341,971
singlet/doubletsinglet
Overlap geneActn1
Upstream geneZfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1
Downstream geneWdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182L08.T7 (MSMg01no182_l08.b1)MSMg01-182L08.TJ (MSMg01no182_l08.g1)
ACCAG375512AG375513
length725784
length of high quality
(start - end)
325 (71 - 395)274 (42 - 315)
definitionCHROMAT_FILE: MSMg01no182_l08.b1 PHD_FILE: MSMg01no182_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:32 2005CHROMAT_FILE: MSMg01no182_l08.g1 PHD_FILE: MSMg01no182_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAAAAGAGCTGCCTGCCTCTGCCTCCTGA
GTGCTGGGATTAAAGACGTGAGCTATCACTGCCCGACACTCGTATTTAAC
AGATGTGCCGTGTGTCAGTTCATGACCAGAACACAGTCTGAGATCTGAGT
CTTTAGGTGATTGTGTTATTGTTGAACAATATGCACATCTGTAACCTGTG
CTGACTACAGTATTACGGAGCAGTAAGAATTTTCTGCTCTGTTAGAGGCA
CCCCATTGTTCCTTCCGGTGATCATGAGGCACCTACCTTCCCTTAAGCCC
TTGTTCCATCCAGATAACAGCCAGGTGTGTGATCTCTGCCAGTGATTCGA
CTAATGTTTTTCACCCCACGCTGGTATATTCTAAGGAGTCAGAGGTCAGC
TCCTGCTCTGCCTGCATGATACTGCTAGAGTGACACTGAGCTAATATCCA
CAGCTTACGAAATAGTGATACTTGTAGTCCAAATCCCCCTGTATGATTTG
TTTTTTATTTCCCTGCCCCTTCCTTTGTCTGCCCCGCTTTCACTCTTCAT
ACTTGTCTCTTTCTCCTCTTTATTTTTTTCTACCCCCCCTTCTTTTCCCT
CTCTCTTTCCTCCCCCCCTTTTTTTTTTCCTTTTTCCCCCCTCTTTTTTA
TTTTCCCCTTTCTTTCCCTCTTTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGTTTCTTTAAAAACACAGAATATGCACCTGTTGCAACCCCAGGTGTG
GACCCGGGGCTGCTCTAGGTTGTCCACAGCATTTGGCTACGATTTCCCTT
CGTGTTCTAGCAGGGGTGTGATTTTGCGAGCTGCAGATAGTTTCTGCAGA
TGTGTGACATTTGAAATTCTGGGGACTTCTGACAGGGTATATAAATGCCA
GGGCCCCGAGAGGCGTTGTAGGTCAGTGGTTGTTGTGGTTTGTTAAAATA
GCTGTGTACAAAGAATATTCTTTAACAAGTTATATAACCTAATGAAGGTT
TGAAGTTTTTTTTTTTTCCCCCCCCCCCCCCCCTTAATGTCCTTAAATAG
CAGGAAGTGTTCCCCCCCCCTCTCTTAAATACACTATCCTTTCTATCCGT
GTTTCCCTCCTCACCTATCGTCTCTGTTATTATACCATTTTTTTTTTCTC
CCTTGCATCTCTTTTTTTTTTTTCCCTCTATACAATTTATCCTATTTTTC
TTTTTTTGCACCCTTTTTTTTTTTCCCTCTTTTATTTTCTCCTCTTTTTT
TTCTTATTTCTTCTCTTTTTTTCCCCCCCCTTTCCTTTCCCTCTCTTTTT
CTCCCACCCCCTCCTTTTTCTTTCTCCTCCACCCCGTCTATTAATTCCCT
TATAAGGTGTGCATCTTTACCTCTAATTCCTACTCTTTCACAAATTAAAC
ACACTTTCCTCTCAAATTTTATATATATAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_l08.b1 MSMg01no182_l08.b1 CHROMAT_FILE:
MSMg01no182_l08.b1 PHD_FILE: MSMg01no182_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:32 2005
         (325 letters)



>mm_chr12_81341377_81342101
          Length = 725

 Score =  567 bits (293), Expect = e-166
 Identities = 317/325 (97%), Gaps = 1/325 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaaagagctgcctgcctctgcctcctgagtgctgggattaaagacgtgagctatcact 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 595 tcaaaagagctgcctgcctctgcctcctgagtg-tgggattaaagacgtgagctatcact 537

                                                                       
Query: 61  gcccgacactcgtatttaacagatgtgccgtgtgtcagttcatgaccagaacacagtctg 120
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcccgacgcttgtatttaacagatgtgccgtgtgtcagttcatgaccagaacacagtctg 477

                                                                       
Query: 121 agatctgagtctttaggtgattgtgttattgttgaacaatatgcacatctgtaacctgtg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 476 agatctgagtctttaggtgattgtgtcattgttgaacaatatgcacatctgtaacctatg 417

                                                                       
Query: 181 ctgactacagtattacggagcagtaagaattttctgctctgttagaggcaccccattgtt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctgattacagtattacggagcagtaagaattttctgctctgttagaggcaccccattgtt 357

                                                                       
Query: 241 ccttccggtgatcatgaggcacctaccttcccttaagcccttgttccatccagataacag 300
           |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 356 ccttccggtgattatgaggcacctacgttcccttaagcccttgttccatccagataacag 297

                                    
Query: 301 ccaggtgtgtgatctctgccagtga 325
           |||||||||||||||||||||||||
Sbjct: 296 ccaggtgtgtgatctctgccagtga 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)