BAC Information

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BAC

Clone NameMSMg01-183E17
Chromosome12 (Build37)
Map Location 30,352,902 - 30,353,213
singlet/doubletsinglet
Overlap geneMyt1l
Upstream geneAdi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183E17.T7 (MSMg01no183_e17.b1)MSMg01-183E17.TJ (MSMg01no183_e17.g1)
ACCAG375933AG375934
length715730
length of high quality
(start - end)
314 (43 - 356)288 (67 - 354)
definitionCHROMAT_FILE: MSMg01no183_e17.b1 PHD_FILE: MSMg01no183_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:16 2005CHROMAT_FILE: MSMg01no183_e17.g1 PHD_FILE: MSMg01no183_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCCATCCACTCTCTTTCATACAACTTCTTCCCAGTTCTTAATCTACC
ACATACCTTATGCATATTCCCAATATTACAGATATGCTAACAGAGGGATT
TTGCTCAGATAGTGGTCATGTTTTTATGATTATGGTGAAACACCAGCACA
ACCCAGTGTGGGGCTGGTCAGGGCCTTGGAAAGTGCTCTGGGCCAGAAAC
AAAGCCCAAGTCCTTGCCTACCTGTGTCAACATACACATTTATGAACCAC
TTAATGCTATCTCTAGTGAGTGGTGAACTAAACCCATAACATCACCCACC
CATTTGTATTTTTACCGCCACACTGAACACCCCTCTGCCCACTGATGCTC
TGCAGAGCTGCCCCCCCATGTAACTGAGCCCTGAAGCCTGGCTCCTACAC
CATACTCACTGTAGACTCCTCTGTCCATTGATGTTTCTCCCTAAGATGCT
CTTGTCAGACTGGGGCGTTTTGTGCTCACACCTGTGTGCTTCCCTGTGAG
ATACTGACTCCTCTTGGTCCCTGTGGTTCACCCAAGGCACCATGTATCTC
TTGCCACATGGATTGTCTGTGTTGTATATATTATCATTTGAGTGTCTACC
CCCTTTTATCCGCCTTTTTTTTTTCTCCCTCTCCCCTTCTCTCCTTTTTA
TCCTTTTCCTTTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTCACACAACTGAATCCCTAGCCCCTGGACCG
TGTTCTAAGGACTGAGTCCTGGACTGAAGAAAGACAAAGTGAAGTGAGGA
CAGACAGGCACGTTGAGCTCATTCGCTCTCTCCTCTCATGGATGTGACTC
GCCGCTTCAAGCCCCTGCCACTGTGAACTCCTTGCTATGATGCGCTCCAG
TATGGAGTGTGAGCTGAAGGGAAAAGGTTTACTGTTCTGCCCCTAAGTTG
CTTTTGTCCAGTGTTTTGTTAACAGTATCAGGAATGAAACTTGAGCAATG
TGATATTTTAAATCTGCACCTGGCCCGGAGATTTGGACTCTCAGAACTGC
CCAGATGCACACCACCACACAAAATATTGGATTCTATGATCAAATCTGTA
ACTGATTTGGACTCTAATCACATACATTTAAACACGGAAAGAAAAGTCTT
GCCCTCACTCTCCCTTTTCTGATGTCCTGCTGTCTCTCTTTAAGATGTCG
TCTCATATTCTGTTGTAATGTGCCTTCCTGTCTTATTATAGTCTTTATTT
TCTGTAAAAGGTCCTTCCTTTCTCTTTTGAGAATCTGGAAGTGGACATAC
TTTGAATTTCTTAAAGTAGTAAATGGAATATCTTTCCTTTTGTTGTTCCT
AATCCCGTGTAGTTTTTTATTTTATTAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_e17.b1 MSMg01no183_e17.b1 CHROMAT_FILE:
MSMg01no183_e17.b1 PHD_FILE: MSMg01no183_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:16 2005
         (314 letters)



>mm_chr12_30352699_30353413
          Length = 715

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttccatccactctctttc-atacaacttcttcccagttcttaatctaccacat 62
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattcttccatccactctctttcaatacaacttcttcccagttcttaatctaccacat 456

                                                                       
Query: 63  accttatgcatattcccaatattacagatatgctaacagagggattttgctcagatagtg 122
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 accttatgcatattcctaatattacagatatgctaacagagggattttgctcagatagtg 396

                                                                       
Query: 123 gtcatgtttttatgattatggtgaaacaccagcacaacccagtgtggggctggtcagggc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtcatgtttttatgattatggtgaaacaccagcacaacccagtgtggggctggtcagggc 336

                                                                       
Query: 183 cttggaaagtgctctgggccagaaacaaagcccaagtccttgcctacctgtgtcaacata 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cttggaaagtgctctgggccagaaacaaagcccaagtccttgcctacctgtgtcaacata 276

                                                                       
Query: 243 cacatttatgaaccacttaatgctatctctagtgagtggtgaactaaacccataacatca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cacatttatgaaccacttaatgctatctctagtgagtggtgaactaaacccataacatca 216

                       
Query: 303 cccacccatttg 314
           ||||||||||||
Sbjct: 215 cccacccatttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)