BAC Information

Click to search

BAC

Clone NameMSMg01-183O18
Chromosome12 (Build37)
Map Location 113,030,205 - 113,030,831
singlet/doubletsinglet
Overlap geneKlc1
Upstream geneWdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik
Downstream geneXrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183O18.T7 (MSMg01no183_o18.b1)MSMg01-183O18.TJ (MSMg01no183_o18.g1)
ACCAG376368AG376369
length750730
length of high quality
(start - end)		54 (78 - 131)627 (75 - 701)
definitionCHROMAT_FILE: MSMg01no183_o18.b1 PHD_FILE: MSMg01no183_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:04 2005CHROMAT_FILE: MSMg01no183_o18.g1 PHD_FILE: MSMg01no183_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGA
GATCCGCGGAATTCCAGAACACTTGCGGAAAAAAAAAAGCTGGGGCGGAG
CTGGAGAGAGGGCTCAGTGGTTAAAGGTGCTGCCTAGAGGACCTGGGTTT
GATTACCAGCACTCACATGACAGTGCATGACCACACAGGTAACCCCAGTC
CCAGGGGCATCCTGATTCCCTTTCTGGCTTCAAAGGCCCCAGGCCACACG
GGGGGGCCCAAAAATTCCTGGGCCGGGAAACCCCCCCCCCCCCTTAGAAA
TAAAAAAAAAACCCCGACCACCCCCTCGCCCGGAAAACCCCAATAAAAAT
GTTCCCCGTGATTCACCTGGCCCTATCCTAATTTTACTTTAAACCCGGAC
CCTCTTATCTAGACACATTGGATATCCCCTCTTTTTAAAAACTCTCATAG
TCACAAGGCCCCCCCTAGAAAAATTTTTAGTGTGTCCTTCTCATAAATGT
ACCTATTATTTTTTTTCCCCTCCGTTTTCTCAACAAAAAAAAATAATCTT
TCAGATAACTTTATATTCTCATTTCTTCTTCATTTTCTCTCTCTTTTAAT
TTTCACGTATCATTCACATCAATCTTTCCCCCTTATTACTCCCCAATTGT
ATAATAATTCCTCTAATCCTCCACCCTTTCTTTCCTTCTTATTCACTATG
TTACTCTATTTTTTCCTTATTACTTTTTATCTACCCCCTCTTTCTATCCT


AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGCCAGCCTGGTCTACAGAGTGAGT
TTCAGGACAGCCAGGGCTATTTACAGAGACCCTGTGTCCAAAAACAAAAA
ACCAACAACTTGTAGAAGCCAGGCACTAGGGCACACACCCATAATGGACA
CACCTGAAAAACTAGCCCAGGAGATGCCTGAGTCTCCAGACCAGCCTGGG
CTCCACAGCATTCTGTCTCAAACAAAGTGAAGCAGGCAGGGATACAGTCA
GTTGTAGAGCCCTTCCCTTCCACAGGGATGTTTCAATCCCTAGTACTGGC
ACAGTGTACACACTCTCACACACACACACACTCAGACTTGTAGAAATCTC
AGCACAAGAGCAATATGGTTTAAGAGAAGAGGGGCAGGAGACTGCTTCTC
AAGGGCCCCAAGAAAAAGGAGCCAAGGTGGAGGCTGTCCTGGAGCACAAC
TTTCACAACAGACACAGAATCACATGGATATTGGGTAACTAAGAAATCTG
ACTTTTATCTAGAAAAGACTCAATGTCCACAAAGCAGCTTTCGCAGGAAT
GCACCCTACTAGAGAGTGACCTACTATAGCAGTGCCTGCTAGAGCCACAT
CATATCTCACATCATATTTCTCATATCTCAGACCCGAGGAAGCCTGCAGG
AGCCCGTTTCCATGAGGCGTGATCACCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_o18.g1 MSMg01no183_o18.g1 CHROMAT_FILE:
MSMg01no183_o18.g1 PHD_FILE: MSMg01no183_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:04 2005
         (627 letters)



>mm_chr12_113029803_113030831
          Length = 1029

 Score = 1178 bits (609), Expect = 0.0
 Identities = 622/627 (99%), Gaps = 2/627 (0%)
 Strand = Plus / Minus

                                                                        
Query: 3    gccagcctggtctacagagtgagtttcaggacagccagggctatttacagagaccctgtg 62
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1029 gccagcctggtctacagagtgagtttcaggacagccagggctatttagagagaccctgtg 970

                                                                        
Query: 63   tccaaaaacaaaaaaccaacaacttgtagaagccaggcactagggcacacacccataatg 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  tccaaaaacaaaaaaccaacaacttgtagaagccaggcactagggcacacacccataatg 910

                                                                        
Query: 123  gacacacctgaaaaactagcccaggagatgcctgagtctccagaccagcctgggctccac 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  gacacacctgaaaaactagcccaggagatgcctgagtctccagaccagcctgggctccac 850

                                                                        
Query: 183  agcattctgtctcaaacaaagtgaagcaggcagggatacagtcagttgtagagcccttcc 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  agcattctgtctcaaacaaagtgaagcaggcagggatacagtcagttgtagagcccttcc 790

                                                                        
Query: 243  cttccacagggatgtttcaatccctagtactggcacagtgtacaca--ctctcacacaca 300
            ||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||||
Sbjct: 789  cttccacagggatgtttcaatccctagtactggcacagtgtacacacgcacacacacaca 730

                                                                        
Query: 301  cacacactcagacttgtagaaatctcagcacaagagcaatatggtttaagagaagagggg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  cacacactcagacttgtagaaatctcagcacaagagcaatatggtttaagagaagagggg 670

                                                                        
Query: 361  caggagactgcttctcaagggccccaagaaaaaggagccaaggtggaggctgtcctggag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  caggagactgcttctcaagggccccaagaaaaaggagccaaggtggaggctgtcctggag 610

                                                                        
Query: 421  cacaactttcacaacagacacagaatcacatggatattgggtaactaagaaatctgactt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  cacaactttcacaacagacacagaatcacatggatattgggtaactaagaaatctgactt 550

                                                                        
Query: 481  ttatctagaaaagactcaatgtccacaaagcagctttcgcaggaatgcaccctactagag 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  ttatctagaaaagactcaatgtccacaaagcagctttcgcaggaatgcaccctactagag 490

                                                                        
Query: 541  agtgacctactatagcagtgcctgctagagccacatcatatctcacatcatatttctcat 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  agtgacctactatagcagtgcctgctagagccacatcatatctcacatcatatttctcat 430

                                       
Query: 601  atctcagacccgaggaagcctgcagga 627
            |||||||||||||||||||||||||||
Sbjct: 429  atctcagacccgaggaagcctgcagga 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1029
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1019
Effective search space:   628723
Effective search space used:   628723
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |