BAC Information

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BAC

Clone NameMSMg01-184M14
Chromosome12 (Build37)
Map Location 85,423,956 - 85,424,219
singlet/doubletsinglet
Overlap genenone
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5
Downstream geneLOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184M14.T7 (MSMg01no184_m14.b1)MSMg01-184M14.TJ (MSMg01no184_m14.g1)
ACCAG376967AG376968
length752697
length of high quality
(start - end)
270 (61 - 330)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no184_m14.b1 PHD_FILE: MSMg01no184_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:18 2005CHROMAT_FILE: MSMg01no184_m14.g1 PHD_FILE: MSMg01no184_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTGGCCNNNTCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCATTATTGCATGCTGGTCACGTGAAAGCTC
CATAGAGTCCAAGGACACACACGCCCAACTCCTGCTGCAGACCTTACTCC
AAGGGTCCTCAAAATCCCCTTCAAAGCACGAACAGATGCTACTGATCTCT
AGATGCTACTGAATGCAAAAAAGAAACAAAAAGGAAAGGAACCTGGTGCT
TCTAGGTATGGTGGAGGGGGGGGACAGTTTAGTATAAATATATGGGAGAG
CATAGCCAAGGCACAGACATCCTTGAGATTTTTTAGTAGCCATGACCAGA
CTTCATTGGNCCATGTTTTGATGGTTCCCGGGGCAGAACCCCGGAATTTT
TTGTTTATTGATTTGTGGCGTTTGGTCCAAAAAAAAAAAAAAAAATTTTT
GGGGGGGGGGGTTTCCCTTTAATACATGTTATCCCCCCCCCCGGGGTTAT
TTCCCCATCATTATATCATGTGAAGCAGTAAGGCCTTTTAACAGCCTTAA
TTAACCGTATTATATATCACTATTTCCTTCTCTTTTTTCCTTTAGTTTCC
CCCTCTTTTGTATTGCATTCTCAACACTCATGTCCTTCCACTTATATATT
AGCTAACTCCTTTTAACTATTATCAATATACCAACACCCCTCATCCAAAT
AAAGCTATTTTTCCGTACCTCTACCATTACAAAAATTTGCACTCATACCA
TA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAG
TCTGTTTTACGGGAACACTTCATTACCACCGTTCCCCAGCTGAAGAGTTC
TGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACT
TCATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAAT
CCTTCTCAACAGTCTGTTTTACGGGAACCTTTATGACCGTGACCCGCAGT
TCTGGTTCCGGAATGAGGGATCTTCCCTGCGCCGGTGATGGTAACCGTCC
CGGGTTTTTTCTTCCCACCCCCCCCCGCCCCGGGTTTTCTCGTCCCGGGT
TTCAGCACCAACTCTTACACACATTCACGCGACCGGCCAGGAAGAACGCA
ACAAACCGGAATCTTTTGCGGCAAAACTTTATTGCTTACATCTTCAGGAG
CAAGAGTGCAAGAGAGCAAGAGCTCTATTGCTTACATCTTTAGGAGCCAG
AGCGCAAGAGCGCTAGAGTGCAAGAGCCAGAGCAAGAGAGCAAAAGGAGA
GAATGGCGAAACCCCGTCCCTTTTTAAGGAGAATTATTCTCCGCCTAGGA
CGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCAAGTTGTCGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_m14.b1 MSMg01no184_m14.b1 CHROMAT_FILE:
MSMg01no184_m14.b1 PHD_FILE: MSMg01no184_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:18 2005
         (270 letters)



>mm_chr12_85423893_85424562
          Length = 670

 Score =  464 bits (240), Expect = e-135
 Identities = 259/268 (96%), Gaps = 8/268 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattattgcatgctggtcacgtgaaagctccatagagtccaaggacacacacgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 327 gaattccattattgcatgctggtcacgtgaaagctccatagagtccaaggacacacatgc 268

                                                                       
Query: 65  ccaactcctgctgcagaccttactccaagggtcctcaaaatccccttcaaagcacgaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccaactcctgctgcagaccttactccaagggtcctcaaaatccccttcaaagcacgaaca 208

                                                                       
Query: 125 gat----gctactgatctctagatgctactgaatgcaaaaaagaaacaaaaaggaaagga 180
           |||    ||  || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gataacagc--ct-atctctagatgctactgaatgcaaaaaagaaacaaaaaggaaagga 151

                                                                       
Query: 181 acctggtgcttctaggtatggtggaggggggggacagtttagtataaatatatgggagag 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 150 acctggtgcttctaggtatggtgg-ggggggggacagtttagtataaatatatgggagag 92

                                       
Query: 241 catagccaaggcacagacatccttgaga 268
           ||||||||||||||||||||||||||||
Sbjct: 91  catagccaaggcacagacatccttgaga 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)