BAC Information

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BAC

Clone NameMSMg01-185P10
Chromosome12 (Build37)
Map Location 61,411,589 - 61,411,897
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238199, LOC665639, LOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1, LOC100040300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185P10.T7 (MSMg01no185_p10.b1)MSMg01-185P10.TJ (MSMg01no185_p10.g1)
ACCAG377792AG377793
length749777
length of high quality
(start - end)
312 (65 - 376)525 (77 - 601)
definitionCHROMAT_FILE: MSMg01no185_p10.b1 PHD_FILE: MSMg01no185_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:48 2005CHROMAT_FILE: MSMg01no185_p10.g1 PHD_FILE: MSMg01no185_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTAAAAGNNNNNNGCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCATTTTACAGGTGTTATGTGAGGTTAT
TTTTTATATAAATTGTATATTATGATGGTTATTACCACTACACAGAAAAG
CAATTTTAATATAATTATATTGAACCAGCCACCTTTTTGAGAAATACATT
TTCATAAAAAATATTTTTCTGAGGGTGGGAAGCAGGTGCATCATCTATTT
TTGTATCCTAACATTTTTCTTCTTATATAAAGGGACATTAAATGTTTAAA
TGTGACAGGTGCATTTAGATGCCATTAGACTTATCCTAAACAGAGACAAA
ACTACACAAAAGAAATTTTTGTTGGATCTTTTGACTCCCCCCCCCATTAC
TTTCCATTGAATTTTTGCATGTGTAACACAACCCCAACAATAAAACTAAT
GATGTTCTAGAAAGGTGTCAAGATTTAGATTGCTACAAACACTTTAAAAA
GCTAAATGGCACAGAAGGCTGGTGATGAGGCTAATGATGGAGAGATAATG
GCTTCTGTGAACGTCAGCCTTGGATGAAAACAACTCAAGAACAATACCCA
TGTACCCACAGTGAACTGTATTTTTACATTCCTCAAATAAGACTTCTCTT
GTCCCCATGTAATAATTCTACTCATTATATTTTTACCTAATCCCTGCAAG
AACCATCCTGATTCCCCTTTTTCTGCTTCCCTGCCAAGTGTGGGGGGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGACAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TAAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCACCTGGGCATATATCCAGAAGATTCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCCAGA
ATCTGGAAAGAACCTAGATGCCCCTCATCAGAGGAATGGATACAGAAAAT
ATGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCTTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCCTCAAGAATCTCACACAATATGTACTCACTGATCAG
TGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAAATTTG
CTAAAACACATGAAACCTCAGCAAGAATGATAACTGAAAGTGGGGAACAC
TATGCCCCCTCCCTAAAATTAGGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_p10.b1 MSMg01no185_p10.b1 CHROMAT_FILE:
MSMg01no185_p10.b1 PHD_FILE: MSMg01no185_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:48 2005
         (312 letters)



>mm_chr12_61411386_61412097
          Length = 712

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattttacaggtgttatgtgaggttattttttatataaattgtatattatgatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaattcattttacaggtgttatgtgaggttattttttatataaattgtatattatgatg 453

                                                                       
Query: 64  gttattaccactacacagaaaagcaattttaatataattatattgaaccagccacctttt 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 452 gttattaccactatacagaaaagcaattttaatataattatattgaaccagccacctatt 393

                                                                       
Query: 124 tgagaaatacattttcataaaaaatatttttctgagggtgggaagcaggtgcatcatcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgagaaatacattttcataaaaaatatttttctgagggtgggaagcaggtgcatcatcta 333

                                                                       
Query: 184 tttttgtatcctaacatttttcttcttatataaagggacattaaatgtttaaatgtgaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttttgtatcctaacatttttcttcttatataaagggacattaaatgtttaaatgtgaca 273

                                                                       
Query: 244 ggtgcatttagatgccattagacttatcctaaacagagacaaaactacacaaaagaaatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggtgcatttagatgccattagacttatcctaaacagagacaaaactacacaaaagaaatt 213

                    
Query: 304 tttgttgga 312
           |||||||||
Sbjct: 212 tttgttgga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)