BAC Information

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BAC

Clone NameMSMg01-186L09
Chromosome12 (Build37)
Map Location 29,746,569 - 29,746,883
singlet/doubletsinglet
Overlap genenone
Upstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
Downstream gene4833405L11Rik, LOC629608, Myt1l, LOC100043496, Pxdn, Tpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186L09.T7 (MSMg01no186_l09.b1)MSMg01-186L09.TJ (MSMg01no186_l09.g1)
ACCAG378309AG378310
length746748
length of high quality
(start - end)
319 (45 - 363)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no186_l09.b1 PHD_FILE: MSMg01no186_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:47 2005CHROMAT_FILE: MSMg01no186_l09.g1 PHD_FILE: MSMg01no186_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGAATGATGGCAAAGAAACTATGCTGTCCTTTCGATCCTGTATC
GTCGAGTGTCTGATTTCTTAAAACCCTCAGTCTTTGAACTACTCCCCTGC
CACCTCTCCCAGCATGGCCCAGTTGTACCCTGGACTACAAAAGGAGTCAA
GGACAGCATGGGCAGGTCTGTCAGAGCAGGGATCTTCGGGCACACAGGCA
GGAGACTCCACTAACACCTCTGGGAGTCTCCAAGACTGCTAAACTCTGTC
AAAACTGCCAGGGTTTCCAATTAGGAAAAACATCTCGGGGAGGCTTGTTA
GCCTTACTTTTTCTTTTACACGATCACCTAGACATCTTTCTTTAGGCTCT
TCCAGAAGTTACACCCGCCAGCCTCAAAGTCCTCAGGCAAAACCCTTAAA
TTTGCAAGTCAACTGGTGAGGAGTAGGAACCAGAAAGCAGCAAACAGCCA
TGTGTGGTGGCTCATGTCTGTTATCTCCGGAAGTTGAAGCAAAAGGATTG
CTTGCGAATTCAAGTCCAGTCTTGAACGTGACTATCTCTCAGTCATTTAT
TGAAATAAAGAAATCGTGTCCTAACAAACTCTATGTACGTACCGGTTCCA
TAGTTACACATCACTTATCTCCATTCCGTCTTTTTTTCCGTTTTCCATAA
TTTCAATCCCCAATCTTTTCTCCTACCCCCATTCTTCTCTTCCTTN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAGTGCTTATGAGAAGAAACCTCC
AAGAAAATAAGTCTTGTGACCTCAGTTTCTCCAGAAACACAGAGTTGTTC
TTGAATGTGCTTTTGTGCTTCTCCCAGGTGAGTGAGTTTGCTTTCGATTA
TTCATTAAACCTGGCTGTTGTTATTTGTTTATATGTCTCCATGGAAAACC
ATGCTTCTTGCCAGGTGCGGCTTGTCCTTGAGATTGTATACAGATTGAAC
TCACGAGAACTTTACTTACATGGCCTTTCTTAACTCTCAGCACATAAATT
GTCTGGTGTTCTGTTTAACCCCCCCCACCGCTTGAGGTTCTAGTCTGCCT
CATTTAAAAATAACCCCCCCGCACACATATAAAATAATCATGTATTCCAA
TAGCAGCCCTCCTCCTCTCACTACCCCCTATGCAGATCCTCCCTTGTTCT
CTTTCTCCTCTGAAAAGGGAAAGCCCCCCTCTCTGATAATTACCCTCCTT
AGACCTACTCAAATATTACTGCTTGATTTTTTACATTCTTTCTTTGTTGA
TATAGACTATGTGTCCCAGTTACACTTACAGTATCTCTTACTTTATGCAT
AGATTTCTTTTTATATTGTCTGCCCCCAGCAGTTCGGCCTCTTTTTTTTT
TTTTCCCATCTATCCCCCCCCAGCTAATTTATTATTTTCCCCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_l09.b1 MSMg01no186_l09.b1 CHROMAT_FILE:
MSMg01no186_l09.b1 PHD_FILE: MSMg01no186_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:47 2005
         (319 letters)



>mm_chr12_29746365_29747083
          Length = 719

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggaatgatggcaaagaaactatgctgtcctttcgatcctgtatcgtcgagtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattccaggaatgatggcaaagaaactatgctgtcctttcgatcctgtatcgtcgagtg 460

                                                                       
Query: 65  tctgatttcttaaaaccctcagtctttgaactactcccctgccacctctcccagcatggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tctgatttcttaaaaccctcagtctttgaactactcccctgccacctctcccagcatggc 400

                                                                       
Query: 125 ccagttgtaccctggactacaaaaggagtcaaggacagcatgggcaggtctgtcagagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccagttgtaccctggactacaaaaggagtcaaggacagcatgggcaggtctgtcagagca 340

                                                                       
Query: 185 gggatcttcgggcacacaggcaggagactccactaacacctctgggagtctccaagactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gggatcttcgggcacacaggcaggagactccactaacacctctgggagtctccaagactg 280

                                                                       
Query: 245 ctaaactctgtcaaaactgccagggtttccaattaggaaaaacatctcggggaggcttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctaaactctgtcaaaactgccagggtttccaattaggaaaaacatctcggggaggcttgt 220

                          
Query: 305 tagccttactttttc 319
           |||||||||||||||
Sbjct: 219 tagccttactttttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)