BAC Information

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BAC

Clone NameMSMg01-189F15
Chromosome12 (Build37)
Map Location 120,682,355 - 120,682,661
singlet/doubletsinglet
Overlap gene4732474O15Rik
Upstream geneLOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011
Downstream geneLOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189F15.T7 (MSMg01no189_f15.b1)MSMg01-189F15.TJ (MSMg01no189_f15.g1)
ACCAG380068AG380069
length740735
length of high quality
(start - end)
314 (46 - 359)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no189_f15.b1 PHD_FILE: MSMg01no189_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:19 2005CHROMAT_FILE: MSMg01no189_f15.g1 PHD_FILE: MSMg01no189_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCCGGCGAGATACTAGCTCGGGTGAGAATTAGGTTTCTCAGTC
CCTGTGTATCTTCATCTCTATCCCCCGAAGTTTACAATATTTGCAGGATA
TACTATTCACTTGTTAATTTGTGCCTCTTTTTTTGATATCTGTTTTAATC
TGTGAGTGTGGTTTCTTTATTTGTGTGTCTCTGTGTGTGTGTGTTTTATA
TGTGTTGGAAGGGGTACACACAATTCTATCTACATGTGGCGGCCAGAAGT
CAACTTCAGGTGTATTCCTTTATGACACCTTACCTTATCTTTGAGACAGC
ACTGAATTTGTTTTTTCACCCCCCCCCCCACACTTGCTGGGCAGTAAGCT
CCAGGTATTTGCTAGTCTCTGATCCATAGTGCTGAGACTACAGATGCACA
CTCATACATGGATTTTAATGTATATTGGCAAAATAAAGCTTTGTTCTTAT
TCTCATACGGCAATCATTTTACCCACTGAGGCATCTCTCTAGCCCCTATT
AGTGTGCTTTCTTAAGAAATCATTTATTTTTAATGATTTCTATTCTGTGA
TAGCACTTGTACTCGATAATTTTGATAGCACCTTTTATATGCCAACATTC
CCTATGTACTGGTAATTATTTGATTTACCTACATAATAATATTACCATAT
TATACACTTTCGTACCTGCTACATCTTGATTTCTTGACAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACACTATGAAGTAAACTTCTTCATT
TAAGGGGAAGGGAAAGTTGCAGCAGTCAGTAGGAAGAAAGTAAAAGACAG
GCATGGGGATACAGCACTATAATCCCAGCACTAGGAAGGCTAAGGTAAGG
GAAAATGAGTGCCAGTCATGGCTACAAGTTGAATTCAAGGTTCTCCTTGG
TTGGTGAGATTCTTTCACAAGAAAAGGTGGTTAATTTACTGTACTTGGGA
TGTAAAACCTGCTTTCTGTTCAAGAAGACTGGTTGAATCTACCTTATCAG
TTTCCCCCACCATATGATTCTACCGCCCTTTTGAAGTTTAGAAGAGGTAC
TGACTACTTTTTTTCTTGCCTACCACACCTCTCCTATCACCCAGCCTCTA
GCTGCTGGAGTGTTGATAGTTCCACAGTCTGAGGATAAAGAAGGTGGAGG
AAACAGAACACTTGTATTCTACTTGAATAATTGGAAGTTGCCTTAGACCC
TTAATCAGGCAGGTAGGCATAAGTTAGCTTTTTTTTGGATGCAGAATGTT
AGTGAAAATACTGTAGTGTGGAACGGGCATTGGACTTAACAGAATGGATG
CTGGATAGAATATGGAACATGGCTACTCCTGCTAGACATCAATTTTGCCT
GGAAACCANAGATAAACAGGAAATTATTTCCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_f15.b1 MSMg01no189_f15.b1 CHROMAT_FILE:
MSMg01no189_f15.b1 PHD_FILE: MSMg01no189_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:19 2005
         (314 letters)



>mm_chr12_120682188_120682901
          Length = 714

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgccggcgagatactagctcgggtgagaattaggtttctcagtccctgtgtat 64
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 474 gaattcttgccggcgagatactagctcaggcgagaattaggtttctcagtccctgtgtat 415

                                                                       
Query: 65  cttcatctctatcccccgaagtttacaatatttgcaggatatactattcacttgttaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cttcatctctatcccccgaagtttacaatatttgcaggatatactattcacttgttaatt 355

                                                                       
Query: 125 tgtgcctctttttttgatatctgttttaatctgtgagtgtggtttctttatttgtgtgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgtgcctctttttttgatatctgttttaatctgtgagtgtggtttctttatttgtgtgtc 295

                                                                       
Query: 185 tctgtgtgtgtgtgttttatatgtgttggaaggggtacacacaattctatctacatgtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tctgtgtgtgtgtgttttatatgtgttggaaggggtacacacaattctatctacatgtgg 235

                                                                       
Query: 245 cggccagaagtcaacttcaggtgtattcctttatgacaccttaccttatctttgagacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cggccagaagtcaacttcaggtgtattcctttatgacaccttaccttatctttgagacag 175

                  
Query: 305 cactgaa 311
           |||||||
Sbjct: 174 cactgaa 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)