BAC Information

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BAC

Clone NameMSMg01-189G17
Chromosome12 (Build37)
Map Location 94,814,126 - 94,814,419
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189G17.T7 (MSMg01no189_g17.b1)MSMg01-189G17.TJ (MSMg01no189_g17.g1)
ACCAG380112AG380113
length753717
length of high quality
(start - end)
320 (57 - 376)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no189_g17.b1 PHD_FILE: MSMg01no189_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:24 2005CHROMAT_FILE: MSMg01no189_g17.g1 PHD_FILE: MSMg01no189_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCAACCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCTGTTTAGCTCTGTAACCCACTTTTAATAGGGT
TATTTGCTTCTCTGGAGTCTAATAATATCTTGAGTTCTTTGTATATTTTG
AATATTAGCCTTCTGTTGGATGTAGGGTTGGTAAAGATCTTTTAGCAACC
GGTTGGATGTAGTTTTGTCCTACTGACAGTGTCCTTCAACTTACAGATGT
TTTTCAATTTTAATACATTCTATGAAGCAAAAGTTACACTAACACCTAAA
CAATACAAAGACTCAACAAAGAAAGTGAACTTCAGAGCATTTTCACTCAT
GAATTCTGGTGCAAAAATACTCATTTTTATTCTTGCCCACCCACAATAGT
ATACACAAGTGCCCCCACCCCCCCAAAAAATCCATGAGAGAATGCCTATA
GCTGATAAACAACTTTAGCAAAATTGCTAAATATAAATTTAACTCAAACA
AATCAGTACCTTTAATCTACACAAAGGATAAATGGGCTGAGAAAGAAATT
AAGGAAGGGACACCCTTTACAATAGTCACAAATAATATGAAATATCTTGG
TGTGACCATAACCAAGCAAGTGAAAGATCTGGATGACAAGAGCTTCAAGT
CTCTAAAGAAAGAAAATGAAGAAGACATCAGAAGGTGGAAAGATCTCATG
TGCTCATGGATCAGGAAGATTAACATATTAAAAATGGCCATCTTACCTAA
AGC
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTACATGAGTATATGTAATCAAA
GAAGACATTGAATCCATTTAATAACACAAATAAAATGGGGTTGGAGACAT
AGCTCGATGGTTAAGAGAGTGTAATTTTTCCTGAGGACCCTAATTCAGTT
CTAAGAACCTGCTGAGTAGGGCATCTTACAACTGCCTAGGGACTGGGTGC
CTCTGTTTAATCTCTGCAAAAAATTGTTGTACTCATACGATGCATATACT
CATACATACAGACATGCACACACTTATCATTAAAAGTAAAAAAAAAAGAA
AGAAAAATAAACATCTTGATTGGAAACCACCCTTCAATAACATTTCTTTT
CTTTTTTATTTTATTATTTACTTTATTTTTATTTTTATTAAGCAATCCAT
TCATTTACATCGCCATTGATGTCCCACTTCCAGGCTATCCCTCTACAAAC
CACCTATCTCACATCTGTCTTCTCCCCCTCCCATTTGCCTCTATGAAGGT
GCTTCCCCACCCACTCACCCACCTACTCCCGCCCCACTGCTGTTCCAGCA
TCCCTCCTATGATGGGGCACCAAAGCTCCACAGGACCAAAGTCATCCCCT
CCCATTGATGTCACCCAAGGCCATCCTCTTCTACATATGTATCTGGAGCC
ATGGATCTCTTCCTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_g17.g1 MSMg01no189_g17.g1 CHROMAT_FILE:
MSMg01no189_g17.g1 PHD_FILE: MSMg01no189_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:24 2005
         (292 letters)



>mm_chr12_94813927_94814618
          Length = 692

 Score =  458 bits (237), Expect = e-133
 Identities = 279/295 (94%), Gaps = 7/295 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacatgagtatatgtaatcaaagaagacattgaatccatttaataacacaaataaaat 60
           ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 200 actacatgagtatatgtgatcaaagaagacattgaatccatttaaaaagacaaataaaat 259

                                                                       
Query: 61  ggggttggagacatagctcgatggttaagagagtgtaattttt-cctgaggaccctaatt 119
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 ggggttggagacatagctcaatggttaagagagtgtaattttttcctgaggaccctaatt 319

                                                                       
Query: 120 cagttctaagaacctgctgagtagggcatcttacaactgcctagggactgggtgcctctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagttctaagaacctgctgagtagggcatcttacaactgcctagggactgggtgcctctg 379

                                                                       
Query: 180 tttaatctctgcaaaaaattgttgtactcatacgatgcatatactcatacatacagacat 239
           ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 380 tttaatctctgcaaaaa-ttgttgtactcattctatgcatatactcatacatacagatat 438

                                                                  
Query: 240 gcacacacttatcattaaaagt-aaaaaaaaaagaaagaaa----aataaacatc 289
            ||||||||||||||||| ||| ||||||||||||||||||    ||||||||||
Sbjct: 439 ccacacacttatcattaacagtgaaaaaaaaaagaaagaaagaaaaataaacatc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)