Query= MSMg01no189_j06.b1 MSMg01no189_j06.b1 CHROMAT_FILE:
MSMg01no189_j06.b1 PHD_FILE: MSMg01no189_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:35 2005
(673 letters)
>mm_chr12_6427430_6428502
Length = 1073
Score = 1247 bits (645), Expect = 0.0
Identities = 663/669 (99%)
Strand = Plus / Plus
Query: 5 gaattcttcctattatcattcttgtgtataatccccttcctcctcttggccctttgagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctattatcattcttgtgtataatccccttcctcctcttggccctttgagga 264
Query: 65 agtcctcctttccatgtaatatagccaagttcttagtatattttattttaatctctgggg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtcctcctttccatgtaatatagccaagttcttagtatattttattttaatctctggga 324
Query: 125 tggattcagcatgctttttagttcattgtgtgtcgataccaattctctctggagctaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggattcagcatgctttttagttcattgtgtgtcgataccaattctctctggagctaatg 384
Query: 185 ctaggcagcacttaaatgtgataatccaaatagaaaccaaactcctttcagcttttctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaggcagcacttaaatgtgataatccaaatagaaaccaaactcctttcagcttttctat 444
Query: 245 tactaagaatccagttgactaataagtcatgatcaccttgtcaaagatcaactgatgtaa 304
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 tactaagaatccagttgactaataagtcatgatcaccttgtcaaaggtcaactgatgtaa 504
Query: 305 ttgcttgcagctgtgggagaacaagcacatgagatagtcagtttcacaggtagtttctct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgcttgcagctgtgggagaacaagcacatgagatagtcagtttcacaggtagtttctct 564
Query: 365 ctactgtctgcctgtgcatgggttcacacagtcctgctaaccccgggctccactacaaac 424
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 ccactgtctgcctgtgcatgggttcacacagtcctgctaaccccaggctccactacaaac 624
Query: 425 tggaatggtgcattgtgatccccactttaaggtaaatgctatttgatgtcagtgcagatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggaatggtgcattgtgatccccactttaaggtaaatgctatttgatgtcagtgcagatt 684
Query: 485 gcttcttcctatttctatgactctgcagagggtgtctcacccactttttattcctattct 544
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcttcttcctatttctatgattctgcagagggtgtctcacccactttttattcctattct 744
Query: 545 gttgagtcatgacttcatcaccctggtttgagacaaggaggcaatactgattcatgcttt 604
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 gttgagtcatgacttcatcaccctggtttgagacaagaaggcaatactgattcatgcttt 804
Query: 605 aggaagaataactcaacattcttgcttttctatgagatctgccagcttgcagagaactcc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggaagaataactcaacattcttgcttttctatgagatctgccagcttgcagagaactcc 864
Query: 665 agctatctt 673
|||||||||
Sbjct: 865 agctatctt 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_j06.g1 MSMg01no189_j06.g1 CHROMAT_FILE:
MSMg01no189_j06.g1 PHD_FILE: MSMg01no189_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:35 2005
(650 letters)
>mm_chr12_6449944_6451000
Length = 1057
Score = 1197 bits (619), Expect = 0.0
Identities = 645/657 (98%), Gaps = 7/657 (1%)
Strand = Plus / Minus
Query: 1 acccacagtgaactatcgtcatgcctagttccctcaaactttcaaactatagataagccc 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 857 acccacagtgaactatcgtcatgcctggttccctcaaactttcaaactatagataagccc 798
Query: 61 taccttgaaatctgaaaattccccacacaatataattagataaacaaataattattaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 taccttgaaatctgaaaattccccacacaatataattagataaacaaataattattaaag 738
Query: 121 aagagcaaaatgcttcataaatttacctagttaatgttagcctgaattggtcttcaacca 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aagaacaaaatgcttcataaatttacctagttaatgttagcctgaattggtcttcaacca 678
Query: 181 ggaagcttttcccagtgggtggctagaagggaatcttccctgtgttttggatgacatggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggaagcttttcccagtgggtggctagaagggaatcttccctgtgttttggatgacatggt 618
Query: 241 aatctattagatgcttaaagctattctggtgtgctggc---aaaaaaaaaaaaaaaaaag 297
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 617 aatctattagatgcttaaagctattctggtgtgctggcaaaaaaaaaaaaaaaaaaaaag 558
Query: 298 actacccatcatgtgaaagatgggagatgcaatgagtgataatgacctaaggcggctctt 357
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 557 actacacatcatgtgaaagatgggagatgcaatgagtgataacgacctaaggcggctctt 498
Query: 358 ctcatgctccatcctcacattcaatttggggatctttctggattt----aaaaaaaaaaa 413
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 497 ctcatgctccatcctcacattcaatttggggatctttctggatttaaaaaaaaaaaaaaa 438
Query: 414 aaaggctattatgtcccggagacaacactgtcatcactgtagtcaatagaaaagccatct 473
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 437 aaaggctattatgtcccggagacaacactgacatcactgtagtcaatagaaaagccatct 378
Query: 474 atttttaagtaattttctaccatatgttaacctttctagattgggactctaaattctgta 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atttttaagtaattttctaccatatgttaacctttctagattgggactctaaattctgta 318
Query: 534 ggatcaattagaactaatccaaagcacaatattagactctgcctccttttcatttattta 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggatcaattagaactaatccaaagcacaatattagactctgcctccttttcatttattta 258
Query: 594 ttttttaatgcagcagccagaaatagacaagcaatgcccaagtttgcttttgaatag 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttttttaatgcagcagccagaaatagacaagcaatgcccaagtttgcttttgaatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1057
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1047
Effective search space: 670080
Effective search space used: 670080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
