BAC Information

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BAC

Clone NameMSMg01-189N13
Chromosome12 (Build37)
Map Location 69,458,496 - 69,473,109
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040745, LOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189N13.T7 (MSMg01no189_n13.b1)MSMg01-189N13.TJ (MSMg01no189_n13.g1)
ACCAG380392AG380393
length739741
length of high quality
(start - end)		314 (46 - 359)532 (75 - 606)
definitionCHROMAT_FILE: MSMg01no189_n13.b1 PHD_FILE: MSMg01no189_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:55 2005CHROMAT_FILE: MSMg01no189_n13.g1 PHD_FILE: MSMg01no189_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,458,496 - 69,458,803)(69,472,578 - 69,473,109)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTCAAGTTCTTAGCTCAAGCTGTCTGTTAACCATGACTGCCT
GTGCTCTTTCTCAAGCACATCCTTCCAGTCCTAGTACAGTCTGTGAAGAA
TCTCCCATCTCTCCCAGGTTTCATATCTCTCCAACTATTCACTTACCACT
GTAAACCAAGTAAACCAAGACTTCATGTGGTTCAATCACATTGTCATATT
CAACTAGTTAATTTCTTTCTAATACTCAGTTTATTTGAGAGTTTCATTGT
AACTTCGAAATCTATTCATAATAGCACATAGATTTATAGTTAATTGAATA
ATTAGAATATTTGGCCACCCACCCCGGGCGGGGGGGGGGGGGAACCTGTC
ATGGAATTCTGCTCTGCCCAAACAAAGAGAAGAGAAATATGCTATGAAAT
CCAGAAATGATCTGTTAAATTCCAAATGAATATATTAAGGTTTAGACATT
ACTTACAAGCTAAAATTTCTTCCAGTTGGTCCTGGAATCATTTGTACTGA
AACTTTGCTGCTAAGGTCGAATTTTGACTTTACCAGAAAGTCTATGGGAC
CCTTCCTCCTCTGTGGAGAATCTCAAAACCCACATGAACTACCTGAGGAA
TGTCTCATAGTCCCGTACCTGACATTTCTGGAATGAATCCCCATGCTAAT
GAGTCATTTCAGTAACCTTAACCTTCTTTCAACGAACTN

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGATGTGTTTCCAGTAGCATGGTAAT
CTAACAGTTGGCTGGGATCACCCAATGGTTTAGGCTGATTTCTGCCAGAG
GGTTGCAGATGAGATGGTCGTATTACCCGTGGTACTAAGGTTTACCAACC
CCACTTCTTTCCAAAGCTCATTAAGTCACCACATTTTGTTCTTGATAAAT
GTATAAATATAATAATACATCCAAATGTATTATATATTTCTTATGAGGTC
ATCCTTGCTCTTAGTTGTAGGATGATACTGATGTATTTCAAGAATTTCGG
TATTCCTACATGTCTTTAGGAGTGAAGTAGGAGAACACTTGAAAATTGCC
CAATAATTCATCACACACACACATAGACAGACACACACAAAAGAAAGCAA
AATGTGTTACTAAAACATTAGGTAAAAATGAGATACTACTTTAATAAAAA
CGTGGCTTTGTCTCCTACATTAGATTCTGATGAAAAGATCTGATGGTTCT
TGGTTTTGTAGCTTGCCCAAAGAATCAGGTAATAATTTGCATGTGCAGTT
AAACTAAAACAGCAGACTATTAGAATGAAGAATCAGACTGTCTGAGCAGT
TACCACTACTTCTCGAAATGCACCCACTTTGAGTATCATGCCTTGTGCCT
GCAAATTACTGTGACTGCAATTGATAGTGCTATTGAATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_n13.b1 MSMg01no189_n13.b1 CHROMAT_FILE:
MSMg01no189_n13.b1 PHD_FILE: MSMg01no189_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:55 2005
         (314 letters)



>mm_chr12_69458292_69459005
          Length = 714

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttcaagttcttagctcaagctgtctgttaaccatgactgcctgtgctcttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactttcaagttcttagctcaagctgtctgttaaccatgactgcctgtgctcttt 264

                                                                       
Query: 65  ctcaagcacatccttccagtcctagtacagtctgtgaagaatctcccatctctcccaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaagcacatccttccagtcctagtacagtctgtgaagaatctcccatctctcccaggt 324

                                                                       
Query: 125 ttcatatctctccaactattcacttaccactgtaaaccaagtaaaccaagacttcatgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcatatctctccaactattcacttaccactgtaaaccaagtaaaccaagacttcatgtg 384

                                                                       
Query: 185 gttcaatcacattgtcatattcaactagttaatttctttctaatactcagtttatttgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttcaatcacattgtcatattcaactagttaatttctttctaatactcagtttatttgag 444

                                                                       
Query: 245 agtttcattgtaacttcgaaatctattcataatagcacatagatttatagttaattgaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtttcattgtaacttcgaaatctattcataatagcacatagatttatagttaattgaat 504

                   
Query: 305 aattagaa 312
           ||||||||
Sbjct: 505 aattagaa 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no189_n13.g1 MSMg01no189_n13.g1 CHROMAT_FILE:
MSMg01no189_n13.g1 PHD_FILE: MSMg01no189_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:55 2005
         (532 letters)



>mm_chr12_69472378_69473309
          Length = 932

 Score =  990 bits (512), Expect = 0.0
 Identities = 527/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgtgtttccagtagcatggtaatctaacagttggctgggatcacccaatggtttagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 732 agatgtgtttccagtagcatggtaatctaacagttggctgggatcacagaatggtttagg 673

                                                                       
Query: 61  ctgatttctgccagagggttgcagatgagatggtcgtattacccgtggtactaaggttta 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 672 ctgatttctgccagagggttgcagatgagatggtcgtattacctgtggtactaaggttta 613

                                                                       
Query: 121 ccaaccccacttctttccaaagctcattaagtcaccacattttgttcttgataaatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ccaaccccacttctttccaaagctcattaagtcaccacattttgttcttgataaatgtat 553

                                                                       
Query: 181 aaatataataatacatccaaatgtattatatatttcttatgaggtcatccttgctcttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaatataataatacatccaaatgtattatatatttcttatgaggtcatccttgctcttag 493

                                                                       
Query: 241 ttgtaggatgatactgatgtatttcaagaatttcggtattcctacatgtctttaggagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttgtaggatgatactgatgtatttcaagaatttcggtattcctacatgtctttaggagtg 433

                                                                       
Query: 301 aagtaggagaacacttgaaaattgcccaataattcatcacacacacacatagacagacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagtaggagaacacttgaaaattgcccaataattcatcacacacacacatagacagacac 373

                                                                       
Query: 361 acacaaaagaaagcaaaatgtgttactaaaacattaggtaaaaatgagatactactttaa 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acacaaaagaaaacaaaatgtgttactaaaacattaggtaaaaatgagatactactttaa 313

                                                                       
Query: 421 taaaaacgtggctttgtctcctacattagattctgatgaaaagatctgatggttcttggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 taaaaacgtggctttgtctcctacattagattctgatgaaaagatctgatggttcttggt 253

                                                               
Query: 481 tttgtagcttgcccaaagaatcaggtaataatttgcatgtgcagttaaacta 532
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttgtagcttgtccaaagaatcaggtaataatttgcatgtgcagttaaacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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