Query= MSMg01no189_o18.b1 MSMg01no189_o18.b1 CHROMAT_FILE:
MSMg01no189_o18.b1 PHD_FILE: MSMg01no189_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:01 2005
(340 letters)
>mm_chr12_96793947_96794687
Length = 741
Score = 373 bits (193), Expect = e-108
Identities = 279/343 (81%), Gaps = 57/343 (16%)
Strand = Plus / Plus
Query: 1 aaagaagaaaaatggtcaggatataagattattggagaggatataagatttatttagaaa 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaagaaaaatggtcagaatataagattattggagaggatataagatttatttagaaa 260
Query: 61 aa-taaaagaatagaaagaatgagaaagaaatagaattaaacaaagaaccactaggattt 119
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aaataaaagaatagaaagaatgagaaataaatagaattaaacaaagaaccactaggattt 320
Query: 120 atagaattggctagatatgaatccagcatttactctgtgtccatgtccatttatgcagaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaattggctagatatgaatccagcatttactctgtgtccatgtccatttatgcagaa 380
Query: 180 ggacagaaaaacacacacacacacacacacacacacacacacacacacacacacacacac 239
||||||||||| | | | | |
Sbjct: 381 ggacagaaaaaaaaaaaaa-a--------------------------------------- 400
Query: 240 acacacacacacacaca--caagcagtgaaccatggtatcgttagcttcatggggtaaga 297
||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 401 --------------acaggcaagcagtgaaccatggtatcattagcttcatggggtaaga 446
Query: 298 aaacaaaacaaaataaaacaagaaagagctttccattttaaaa 340
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaacaaaacaaaataaaacaagaaagagctttccattttaaaa 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space: 242292
Effective search space used: 242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_o18.g1 MSMg01no189_o18.g1 CHROMAT_FILE:
MSMg01no189_o18.g1 PHD_FILE: MSMg01no189_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:01 2005
(247 letters)
>mm_chr12_96815497_96816141
Length = 645
Score = 443 bits (229), Expect = e-129
Identities = 242/247 (97%), Gaps = 2/247 (0%)
Strand = Plus / Minus
Query: 1 tgtacctacacgccacatttcttccttgagatctgagggttgaagacaaagtcctcacag 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgtacctacatgccacatttcttccttgagatctgagggttgaagacaaagtcctcacag 470
Query: 61 tgagctgcaagtacatcagctggtaagcagcttccccttccccaagattatttaaaataa 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgtgctgcaagtacatcagctggtaagcagcttccccttccccaagattatttaaaataa 410
Query: 121 aatcgtttgttattctagtcagctgaaataaataaaagcttgtgacgtccactagggcca 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aatcgtttgttattctaatcagctgaaataaataaaagcttgtgacgtccactagggcca 350
Query: 181 cttctttacctaatattgtgaggtcaaggagaagagaagtagattgggcannttctcaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 349 cttctttacctaatattgtgaggtcaaggagaagagaagtagattgggca--ttctcaag 292
Query: 241 tgaagaa 247
|||||||
Sbjct: 291 tgaagaa 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 645
Length adjustment: 9
Effective length of query: 238
Effective length of database: 636
Effective search space: 151368
Effective search space used: 151368
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
