BAC Information

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BAC

Clone NameMSMg01-190P18
Chromosome12 (Build37)
Map Location 76,571,371 - 76,571,514
singlet/doubletsinglet
Overlap genePpp2r5e
Upstream geneKcnh5, Rhoj, Gphb5
Downstream geneWdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190P18.T7 (MSMg01no190_p18.b1)MSMg01-190P18.TJ (MSMg01no190_p18.g1)
ACCAG381152AG381153
length897811
length of high quality
(start - end)
---144 (132 - 275)
definitionCHROMAT_FILE: MSMg01no190_p18.b1 PHD_FILE: MSMg01no190_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:25 2005CHROMAT_FILE: MSMg01no190_p18.g1 PHD_FILE: MSMg01no190_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCCCGCCGGCATTCCGTATCATATAAATCAAAATCATTNTATNACCA
ANTTCAACGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGTGAATTCCATGTCGAATTGTGCAACAGTGTCTAATTGCGGAA
ATATGCAGGCTTGAATAAGTTACCCAGAGCCGAACTGTTCCCACTGTTTC
TAAAGAGAGCCTAGATGCGAGTGACCCGTTTCGCTGAATGATCCCTCGCT
GGGTGTTACTGCTTCAAGGATACCCTGATATTATTATGTCTAACTTGCTC
TGTCCCATTCAGCAGAGCACTAAATCACCGCTCCTATTTTCTCCATCGAT
AACGCTACACTCCAGCTGTACGATCACGAGATTATATGCCTCCGCCCTCG
CCAAGTCTAGAGCACGACTGCATCTATTATATTTTGCTCCCAGTCCACTT
CCCACACACAGAAATTTTAGCTGCATTTCCCCCAGCGAGCCCCCCGTATT
TTAACATTTATTAATGTCGTGCCCTGTTCTGTGTCGACATAAAAAAAACA
AAACATACTTGCCCTGGTGGAGGGTTCTTTTTGCATTGTTGTGTCATTTC
GAACTAAGTATCTTTTGTACGAAAAGCTTTAACGACACCCCCTCACACTA
TTGTTTCTTTACGCCTTGTATCACCAATATCTCTTCGCGCCTCCGGCACG
CATCGATTCTCCACAACTCTCCCTCCGCCCCCCCCCCATTTATTTTTTCC
ATGACCCTTTATTTACCCCGCCCTTTATTAATTTTTTCCCCCTCTTCCTA
CCCACTCTTCTAACCCGCCCCCTTCGTTGTCTGTATACACCACGCGGTTA
TCACGAATCCTCCCGCCATTTTACAGTCTGACCCATCTCCCGCCCCG
AACTCCCATTCTTAAATTTTTTACATCTTCTCTCTCTCCCCCCTTTTTTC
CTTTTTCAATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCTTAAATTGTAAAT
GGTCCAAACCTAGATCCTGCCATTCACATAACATAGTACATGTTTACTTT
GATGAGAATTCTGCCCTGAGCACAACTTGTGTAACAACATTGCTGGGCTG
GGGTCATTGGGAATTTCAGTGTCTGCTTTGAGATAGGTTGTTTCACCTTC
TTGGGCCTTCTGGTAGAGCTGAGGCGTTTAACTTAAATCTGTTTCTCTGC
TTGTACTGAAAAGCCCAGAAGCTGGTGACATACAGCGTTGAAGGCCATGG
ACTTTAACCACTCAATTTTTTTTTCATCCCCCCCCCCGCTGCTTCTCACT
GTGGTATCACCATCAATTCAGCTCTCTGGACAACCAAAATGATAATCTGC
CCGGTTAGGATCAAACTGCCTCCTCGAGGGACAGACCTGTGTGAATGAGT
ATATCGCTGTATTTGTTGCCCCTGATCACTGATATTGCTCTACCACCCTT
TCCCCCTGCTTTTAAAACTTTCTTCCCATTGCAATCTGGATTTCCCCTCC
TCAACCCATTACTCTTTGCGTCACGTTCCCTAACCTTTTCACTTCATATC
TCTTTTTTTTATAACCCTTTATATTATGCTTTCTGAACACATACCCTATA
TTTAAATGTATCGATTAATCACTTTATTTCTAATTTTCCATACCCTTCCA
TACCTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_p18.g1 MSMg01no190_p18.g1 CHROMAT_FILE:
MSMg01no190_p18.g1 PHD_FILE: MSMg01no190_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:25 2005
         (144 letters)



>mm_chr12_76571171_76571714
          Length = 544

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggcttaaattgtaaatggtccaaacctagatcctgccattcacataacatagtacat 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgtggcttaaattgtaaatgatccaaacctagatcctgccattcacataacatagtacat 285

                                                                       
Query: 61  gtttactttgatgagaattctgccctgagcacaacttgtgtaacaacattgctgggctgg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 284 gtttactttgatgagaattctgccctgcgcacaacttgtgtaacaacattgctgggctgg 225

                                   
Query: 121 ggtcattgggaatttcagtgtctg 144
           ||||||||||||||||||||||||
Sbjct: 224 ggtcattgggaatttcagtgtctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)