BAC Information

Click to search

BAC

Clone NameMSMg01-196L11
Chromosome12 (Build37)
Map Location 109,784,729 - 109,785,012
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1
Downstream geneEvl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196L11.T7 (MSMg01no196_l11.b1)MSMg01-196L11.TJ (MSMg01no196_l11.g1)
ACCAG384725AG384726
length746747
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no196_l11.b1 PHD_FILE: MSMg01no196_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:21 2005CHROMAT_FILE: MSMg01no196_l11.g1 PHD_FILE: MSMg01no196_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCACATTTGCTGCTCTTATCCGTAGACTGAAGTGCTCATATCAG
CTGACTGCTTGCTCTAAGATCTCATGACTTGTAGGGTAGGTACCCTCTTA
CCTGAGGAATTAGGTGGCTGGCTGGTGGCTCGTTCTCCCTGGCGATGGAG
AGGAGCTACATTGTTCCTCTGCTGATAGACACATTACTGCCGTAATGCTG
GTAGCGCCGGGGAAAGTCCCTCTGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGTTGCTATGCGCCAATGTATTCTGATTCCGAGTTTAGATACT
TATTGTTGTCCCTCGCCAAAATCCTCTTCTTGCTCTTCATTTCCCACCTC
TTTTCCCCTTTAGTTCTTTCTCGCGTGCTTTATCTCCTTATCTGGCTCCT
TATTCTCTCCTTTTTTTTTTCTGCCTTCTTTCCCCCCTTCTCCCCCTCTT
TCTATCCTTTCTTGTCCCTCTATTTTTCCCCTCCCACTTTTTAACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAAAAAAAAATTCTAAATTTT
CAGTGTCAATGTGGTAGGCTGTAATGACTCTTCATTTCCTTTAAAGTCTC
TTCCTGGCGGAAGATGCCCAAAGCTATTTTTTACCTAAAGGCAGTAAACT
CCTCATGCTCAAAGGACAGCCAAGGAGTGACAAGCAAGCTGTCTGCCAGA
CTCACCAGCCCCAGCCCTAATTGGCCCCGAGCCTTTGCCTATTTCTAGGT
CATTCAGAAAAAGTAAGTTTAAATTATGTCCCAAACTAAGCTGTGGTTTT
GTGAGAGGAGCTAATTATTATGCCCACACCGCCGAATGACCCGTGCAGTC
TCTTCTATCAGAGGGTCAAACAACAAAGGAAGACTCGTCTTTAAAGAAAT
CGGTATAAAGATGCCATCTGCCAGAACTCGGAGGCCGCTGCTCCCTCCTC
CACCCCTGCAGTCTACATTTTTCTGAGATCAAAGCGTGTGCTCAAGGTTG
CAGCCAGCTCCCAGAGCTACTCTGTACTTTATCAGCTGCTCTGTTTATCG
TTAATCAACGGTCTACGAATGATCCGAGTTCTCTATCAATGTGACCCCCC
TATCGTTAATTCTCAACCGCGAACCCTCATTATAATACATTGCCTAGCTC
CCCACCTTTTTTCTTTTTTCCTTATGATAAACATCACCTTCTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_l11.g1 MSMg01no196_l11.g1 CHROMAT_FILE:
MSMg01no196_l11.g1 PHD_FILE: MSMg01no196_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:21 2005
         (287 letters)



>mm_chr12_109784525_109785212
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%), Gaps = 1/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaaaaaaaattctaaattttcagtgtcaatgtggtaggctgtaatgactc-ttcatttcc 63
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 aaaaaaaaattctaaattttcagtgtcaatgtggtaggctgtaatgactccttcatttcc 264

                                                                       
Query: 64  tttaaagtctcttcctggcggaagatgcccaaagctattttttacctaaaggcagtaaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaagtctcttcctggcggaagatgcccaaagctattttttacctaaaggcagtaaac 324

                                                                       
Query: 124 tcctcatgctcaaaggacagccaaggagtgacaagcaagctgtctgccagactcaccagc 183
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 tcctcaagctcaaaggacagccaaggagtgacaaggaagctgtctgccagactcaccagc 384

                                                                       
Query: 184 cccagccctaattggccccgagcctttgcctatttctaggtcattcagaaaaagtaagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccagccctaattggccccgagcctttgcctatttctaggtcattcagaaaaagtaagtt 444

                                                       
Query: 244 taaattatgtcccaaactaagctgtggttttgtgagaggagcta 287
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaattatgtcccaaactaagctgtggttttgtgagaggagcta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)