BAC Information

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BAC

Clone NameMSMg01-197B05
Chromosome12 (Build37)
Map Location 99,786,527 - 99,786,759
singlet/doubletsinglet
Overlap geneKcnk10
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197B05.T7 (MSMg01no197_b05.b1)MSMg01-197B05.TJ (MSMg01no197_b05.g1)
ACCAG384949AG384950
length685747
length of high quality
(start - end)
234 (99 - 332)606 (128 - 733)
definitionCHROMAT_FILE: MSMg01no197_b05.b1 PHD_FILE: MSMg01no197_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:49 2005CHROMAT_FILE: MSMg01no197_b05.g1 PHD_FILE: MSMg01no197_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATTCCGAGAGGATCCGCGGAATTCAGTCCCACTTTTGCCCAACT
GTCCGAGAGATGAGCTTGTAGCTTTGGAGCTTCCCTGGCATGCTGCCAGA
AATGCAGCACCTGGCTTCCAGGCACGCTGCCATAGGCCCGCCATCAAGGT
GGCTCTGTGAGCTGCCCTAAGGCGGCTGCTCGATCTGAAACAGACAGACA
TCCTCATAGGACAGACAGACATCCTCACAGGACCACAAGCACAGTAGTCC
ACAGGAGGTTCTGACTGAGCATCTCTACAGTACCAATTTCAGCATCAACA
TATCGCCTTTGGGACCAAGTCCTGACTGAAATGATTATGCTTTCTCTTTC
TCTGCCTAAACACGCAATTCCCGGTGACTGGCCAACCTTCTCAGGCATTC
TATAGGTGCTGCTTTCTACCCTTAGAAAACTTTTCAGTGCAGTCACCTAT
GACCTTTCAATAAGCTTCTCCTTATGCATTCATTAATATGTTATATTAAA
ACACGTACATTTCCTCAATGCACGTCTTACATATATTTTTCTATTGCCAT
TGTATATAGGGAGTTCTAAAGACTGATAAGAGAAAGTCTGCGTGTCGGTC
ACCACACTATATGCTCCAAATGCTTATTGATAACAAAAATCAATATGGTA
GCTGGCATACTCCTTACATTGATGGAACGATGGCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTCAGCACCTACATTAGGCA
GTTCACCTATAACTTCAATTCCACCGGATCCAAAGTACATTCATGGCCTG
TGTGGGCACCTGCATACATACAGACATCTGCAACACACTGTGCCCAACCC
TGAGCACGTTAAAATTTCTTTATTATTTTTAAATAATTATTTTAATATTT
ATATTTCTTTTTTCCCCATCTCCATGAGGGTGTCACCATCCCACTAGACC
CTGTGGCTCCCTGGAACCTCCAGTCTCTTGAGGGTTAGGTGCATCTTCTC
TGACCGAGTCCAGACCCAGCAGTCCTCTGCTGTATATGTGTTGGGGACCT
CATATCAGCTGGTGTATGCTGCCTGGTTGGTGGCTCAGTGTCTGAGAGAT
CTCAGGGGTCCAGGTTAATTGAGACTGCTGATCCTCCTACAGGGTCACCC
TCCTCCTCAGCTTCTTCCAACTTTTCCCTAATTCAACCACAGGAGTCGGC
AGCTTCTATCCATTGGTTGGGTGTAAATATCTGCATCTGACTATTTATTT
ATTTAGATATTTTCTTTATTTACATTTCAAATATCCTCTTTCCTAGTCTC
CCCTCTGAATATCCCCTACCCCCACCCCCGCTCCCTAAACCACCCACTCC
GGCTTCCTGACCCTGGCATTCCCCTATACTGGGGCATAGAACCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_b05.b1 MSMg01no197_b05.b1 CHROMAT_FILE:
MSMg01no197_b05.b1 PHD_FILE: MSMg01no197_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:49 2005
         (234 letters)



>mm_chr12_99786327_99786960
          Length = 634

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaatgcagcacctggcttccaggcacgctgccataggcccgccatcaaggtggctctgt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 gaaatgcagcacctggcttccaggcacgctgccataggccggccatcaaggtggctctgt 260

                                                                       
Query: 61  gagctgccctaaggcggctgctcgatctgaaacagacagacatcctcataggacagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctgccctaaggcggctgctcgatctgaaacagacagacatcctcataggacagacag 320

                                                                       
Query: 121 acatcctcacaggaccacaagcacagtagtccacaggaggttctgactgagcatctctac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 acatcctcacaggaccacaagcacagtagtccacaggaggttctgactgagcgtctctac 380

                                                                
Query: 181 agtaccaatttcagcatcaacatatcgcctttgggaccaagtcctgactgaaa 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaccaatttcagcatcaacatatcgcctttgggaccaagtcctgactgaaa 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)