BAC Information

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BAC

Clone NameMSMg01-197L18
Chromosome12 (Build37)
Map Location 106,427,648 - 106,427,952
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5
Downstream geneTcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197L18.T7 (MSMg01no197_l18.b1)MSMg01-197L18.TJ (MSMg01no197_l18.g1)
ACCAG385342AG385343
length735782
length of high quality
(start - end)		642 (45 - 686)337 (76 - 412)
definitionCHROMAT_FILE: MSMg01no197_l18.b1 PHD_FILE: MSMg01no197_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:43 2005CHROMAT_FILE: MSMg01no197_l18.g1 PHD_FILE: MSMg01no197_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCCTCCTGCCTCAGCTTGCCTAGTGAAGGAATTACATCACTG
TGTCCAGGTCTGTGTGGGGCTGGAGATCTGACCCATGGCTTTGCACAGGG
TAGACCACTGTTCTATCAACTGATCTCAACCCCTAGGCCTGTCAGGCATT
TCCTAGGTGTCCAGCCTAGTTTCACATCAACTTATCACAGGCTCAAGTCA
CCTGAAAAGGGGGGACCTCAATTGACCAAGTGCCTTCATAAGATCTGGGG
GCAGGCAATCTTGTAGGGCATTTTCTTAATCAGTGATCAATGGGAGAGGA
CCCCCACCATTGTGGTTGGCGCCATCCCTGAGTTGGTGGTCATGGGTTCT
GTAAGAAATCAAGCTAAGCAAGCCATGGGGAGCAAGCAGTAGTCAGGTCC
TGCCTCCAGGTTTCTGTCCCTGTTCCTGTCCTGAGTTCCTTTAACGATGG
ATTACAATGTGGAAGTTAAGCCATTCTCCTCCATCTTGTTTTTGGTGTTT
CATTGCAGCAATGGTATCCCTCACAAGGATAGTCCACCCTACATCCACGT
CTTCCTGCAACTGTAGACTGGTGCCTGCAGCCCCATTTTCACAGATATGA
AAACTGAGGCATGACCTGAGTGAGGTGGGCAGCAGTGGGAAACCATGACT
CGCCTATTCTTGGCTCTGACACTTTTCTGCCAGGT

ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTAAATCATAATTCATCTGCTGC
TGTTGCTCCCAGGCTTGAGTGGCCTGAAGAAGTGTTTGACAGAGAAGGGA
TCCTTACACTAGGAGCTGACTACGGGACTTGGGGGAAGTCCTAATGGGTT
CTGTGATCTGCAGGTGATGTAGAGACCCACACTGCTGGAAACCTGCTCTG
GACCATGGCTTTAGTTCACAGCAGGTCCTTGGGGGCTAAAACACTCTCTA
ATGAAGGCTCTGGGTATCAAAACTGCTCCCCAGTGTCCTGGAAGAGACTA
TGGGACACCTCCCCTGTCTGGGGGTGGAGAGGAAATAGGGGCGTTAGGTC
TCTTTGAATGCTAGCCCCCCCTTGCAGTCCCATCACCCTATCCTAACCTT
TTCTAGCCCAGCAGCCCTTCCCTGAAGCTCCCTTGACTCCCTGAATACCT
CAGCCATTTTGGCAATGGGACTCTCTTTGTCCCTTATCCTCTCCCTCCTT
GCATGAAGTAAGGTTATAAAGGTATAATAGTATGGGACGTTATGTATGTC
ATCTACTCATCCTTTTCTTCTCTTTTTTGTTTTTTTTTTTTTTTTATTAT
TAATTTAACTATCTTCTCTATTTATTTTTATTATCCCTCTCTTCTCATAT
CACTTTATATATATTTAAATAATAATTATCAATCATACAACATTAGAATT
TCTACATATCAGCACTCACCTGCCTATTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_l18.b1 MSMg01no197_l18.b1 CHROMAT_FILE:
MSMg01no197_l18.b1 PHD_FILE: MSMg01no197_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:43 2005
         (642 letters)



>mm_chr12_106426911_106427952
          Length = 1042

 Score =  582 bits (301), Expect = e-170
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                        
Query: 338  gttggtggtcatgggttctgtaagaaatcaagctaagcaagccatggggagcaagcagta 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 gttggtggtcatgggttctgtaagaaatcaagctaagcaagccatggggagcaagcagta 983

                                                                        
Query: 398  gtcaggtcctgcctccaggtttctgtccctgttcctgtcctgagttcctttaacgatgga 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982  gtcaggtcctgcctccaggtttctgtccctgttcctgtcctgagttcctttaacgatgga 923

                                                                        
Query: 458  ttacaatgtggaagttaagccattctcctccatcttgtttttggtgtttcattgcagcaa 517
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922  ttaaaatgtggaagttaagccattctcctccatcttgtttttggtgtttcattgcagcaa 863

                                                                        
Query: 518  tggtatccctcacaaggatagtccaccctacatccacgtcttcctgcaactgtagactgg 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862  tggtatccctcacaaggatagtccaccctacatccacgtcttcctgcaactgtagactgg 803

                                                                        
Query: 578  tgcctgcagccccattttcacagatatgaaaactgaggcatgacctgagtgaggtgggca 637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802  tgcctgcagccccattttcacagatatgaaaactgaggcatgacctgagtgaggtgggca 743

                 
Query: 638  gcagt 642
            |||||
Sbjct: 742  gcagt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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