BAC Information

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BAC

Clone NameMSMg01-198M13
Chromosome12 (Build37)
Map Location 31,060,625 - 31,100,054
singlet/doubletdoublet
Overlap genenone
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198M13.T7 (MSMg01no198_m13.b1)MSMg01-198M13.TJ (MSMg01no198_m13.g1)
ACCAG385965AG385966
length816731
length of high quality
(start - end)		171 (92 - 262)345 (387 - 731)
definitionCHROMAT_FILE: MSMg01no198_m13.b1 PHD_FILE: MSMg01no198_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:07 2005CHROMAT_FILE: MSMg01no198_m13.g1 PHD_FILE: MSMg01no198_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,060,625 - 31,060,784)(31,099,710 - 31,100,054)
sequence
TTTTATCATTTATTTTTTTTTTTTTTACTCAAAACTANNNTNTTTTTCTA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
TCTGAGAATGTTACCCACATGACTTTTCTTTCTTCTCAGAGTGTAAATTG
TCTGGGGCTCTGTATAAAGTTGGCTATTGAGTCCTTAGTCCACCTCATTT
ATTGGCTTTATTCTCCCAGATCTCACAGCCTCTGGAGCATTCACACCCAC
AGTTTGTCTTCCAGAGGTGGTTTTGCTTTCTTCCAAGCAGATAGTCAGTA
TTAATCACACGATATGCTCTCCCCATTTCTCTGAAGCAAGGAGAGGAGGC
TGTCAGTGTTCTTGGTCCTATTGTTTTCATCAGAGGGACACAGTAAATGT
CTAATTGACTTTTTTTGACCTCCGCCTCCTAATAGTTAAAAGTATCTTCT
GTATTGCCACCCCAGGGACCCTGTCTTTGACACATGGGCCTAAGGGGGAT
ACTCAAAACCATACTGTAGTCCCATCCCTCCTTTGGAAGCTTATGCTTCT
TTATCATTATTTTTTTTTGCTAATATAGCTCAGTCTGATTCATATTATAC
AGATGTTTCTAATAATGTCCATTCTTTTTTGCTTTCTTTGTATCCAGAAC
TATCTCTGAGCCTTGTGATACTAAATCACGAATAGACTCAATCTTAGAAA
TCTTGAACATAGAAGTAGACCTATACCCTTACAAGAGACAATACCATATT
TCGATTACTACCCAACTTCTCTCCCACACCACACACATCACAAAAATATA
CACTTTAAGCCCTATG

ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGCACACTTTAAAATCTTTG
ATACAATAAAATGTTTTTGAAAGGCACTTAAATTAATATAATAGCTTTAA
TTGTTTTTATATTAATTTTTTTATTTGAACCATGTGCATTTGTCTAAAAA
TACCTTTCTGTGAAAGCTGTCCCTAATAGCATCTTCAGATAAAAATTTAA
AAGAATCATAATGAATGCTTCTTATTCAAATCTAAAATGAAAATTGATGT
CTGGGATATTGTAGTATCTTTTTTCTAAAGAACCTATATTTAGAGACATA
GCTGTCATTTATAATGCTTTAATTATCCGCTTGACTCACAGTAGAAATTA
TTTTGCAATTCATAATTTTTAAGAAATATGGACATCTAAATGGGAGAGTA
TTTATCTTTGTAAAGTATCTATTCTTACACAAAATGAAGACGCTCCATTT
AGAATCTAAAATGTGTGTTATATGATGGTTAATAGTCAAGATTTATTGTT
CTTTGATACATAAGTTTGCATGTTAATAATCCAGTAAATCCAGTAATTCC
TGTGGAATGGCACCAGGTAGACAATGAGGAGTGCAAAATCCTGTTGGACT
TCTGATGTTATGACAAGACCTGAGGAAAATCCCACAAAAGAACATGAAGA
GCTCACTCATCCCTCGTCACTCTGACCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_m13.b1 MSMg01no198_m13.b1 CHROMAT_FILE:
MSMg01no198_m13.b1 PHD_FILE: MSMg01no198_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:07 2005
         (171 letters)



>mm_chr12_31060414_31060984
          Length = 571

 Score =  279 bits (144), Expect = 9e-80
 Identities = 156/160 (97%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgagaatgttacccacatgacttttctttcttctcagagtgtaaattgtctggggctctg 71
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 212 tgagaatgttacccacatgacttttctttcctctcagagtgtaaattgtctggggctctg 271

                                                                       
Query: 72  tataaagttggctattgagtccttagtccacctcatttattggctttattctcccagatc 131
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tataaagttggctattgagaccttagtccacctcatttattggctttattctcccagatc 331

                                                   
Query: 132 tcacagcctctggagcattcacacccacagtttgtcttcc 171
           ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 332 tcacagcctctggagcagtgacacccacagtttgtcttcc 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no198_m13.g1 MSMg01no198_m13.g1 CHROMAT_FILE:
MSMg01no198_m13.g1 PHD_FILE: MSMg01no198_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:07 2005
         (345 letters)



>mm_chr12_31099510_31100254
          Length = 745

 Score =  667 bits (345), Expect = 0.0
 Identities = 345/345 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtagaaattattttgcaattcataatttttaagaaatatggacatctaaatgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cacagtagaaattattttgcaattcataatttttaagaaatatggacatctaaatgggag 486

                                                                       
Query: 61  agtatttatctttgtaaagtatctattcttacacaaaatgaagacgctccatttagaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtatttatctttgtaaagtatctattcttacacaaaatgaagacgctccatttagaatc 426

                                                                       
Query: 121 taaaatgtgtgttatatgatggttaatagtcaagatttattgttctttgatacataagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taaaatgtgtgttatatgatggttaatagtcaagatttattgttctttgatacataagtt 366

                                                                       
Query: 181 tgcatgttaataatccagtaaatccagtaattcctgtggaatggcaccaggtagacaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgcatgttaataatccagtaaatccagtaattcctgtggaatggcaccaggtagacaatg 306

                                                                       
Query: 241 aggagtgcaaaatcctgttggacttctgatgttatgacaagacctgaggaaaatcccaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggagtgcaaaatcctgttggacttctgatgttatgacaagacctgaggaaaatcccaca 246

                                                        
Query: 301 aaagaacatgaagagctcactcatccctcgtcactctgacccctg 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaagaacatgaagagctcactcatccctcgtcactctgacccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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