BAC Information

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BAC

Clone NameMSMg01-199F03
Chromosome12 (Build37)
Map Location 30,408,060 - 30,541,406
singlet/doubletdoublet
Overlap geneMyt1l
Upstream geneTtc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199F03.T7 (MSMg01no199_f03.b1)MSMg01-199F03.TJ (MSMg01no199_f03.g1)
ACCAG386301AG386302
length760750
length of high quality
(start - end)		239 (61 - 299)493 (89 - 581)
definitionCHROMAT_FILE: MSMg01no199_f03.b1 PHD_FILE: MSMg01no199_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:50 2005CHROMAT_FILE: MSMg01no199_f03.g1 PHD_FILE: MSMg01no199_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,541,168 - 30,541,406)(30,408,060 - 30,408,552)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCA
TCAAGACCATCAAAGGAATGCTGCCCCATCCTGATGTGCTGGCCAAGATC
CAAGTGCAGTTGGTTACATTTTGATCATGAGGGAAATGTGGGTTGAAGCC
ATAGCAAAAAGACGCCTGAGCAAAGTGTGCTGGATTGTTGCTCCTAAGGG
TGTTGCTTTGAGCTGCTAAAGCTATTTGTCCATCAGGCACTGATTTAAAT
GCTGCTAGACCGTAAGGCAAGAGGAAGCCCTCGAGCTGCTCACAGTTTGT
GAAGACTACGTCAAGTTTTGAGTCCTGCAATTGGTAGGAAGGCTAGTTCA
GGACGTCTACGGCAAGTTAAGAGTCCTGTGTGCGACAGGTAGGTCTAGTA
TCTGGAAGCCCCCCATCATGATTAGGCGTTCTATGGCACTACGTTCCTGT
ACTGGTAGTCTGATAACATTGACATGTCTGCCTTATCTATGTATTTGCTC
ATTTTTCTCCCATTTCATGCTCATGTCGCTTGTCTACAGTATATTCTTAA
TTCATCATCTCTGTTTCTGTTCTTTTTGATTCATTATATCGTTTTTATTT
TTTCTCCTCTTTTCTTTTTAATTTACTCACTTGTATTTTTCTATTTTATT
CACTTTTTTTTTTTTTTATTTTTATATTTTTTTTTTTTCCTTCCCTCTCC
TCTCCTTGTCCCACTCTTTCACTCTATTTTCTTCTTACCTCTTTTCTCTC
TCCTCTCTTT

TCATCGTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCTGAGGACA
CAGTAAGGCAGGTGAGTTACTGACTGTGGAAGGAAACAGATACAGGTGAG
AAGCATGGTCTATTGCAAGCATGGCTCACCAACCAGCAGTGTCCTCTCTA
TTAGTACTCTGGGGTGTTCCCTAGCATCTACACGTTGTCCAATAGGGCTG
TGCAAGGCATGGGTTGATAGGTATGCTCAGAAGGTGCACTCTCCATTCTC
TAGAGTAGAAACTAATAGTAGGTACAGCATCCTTAGACATCCATAGAGCC
ACATTCATTTGTTCAGGAATTTGGGGATAGGAATGGCTAGCACACTTGAA
AGTCTTTCCCTCTGGGACCTGAAAACAATGCCAATATATATTATATTGTC
TAAAATCAGTGTTCTGTTATTCATTGCAATGGGCTATCAGAAGTCATAGT
TTGTGCATCTGGTGCTAGACTCTTTCAAGTTTGGGGACTCATAGGAGTGT
GTCCTGGGTCCCAGGCAGGGTAAGTCCATCAGGTGAGCATAAGGAAGAAA
AAGAATACAGCTCGTGCTTTCTCTCTCGGGTGAGAGTCTGTGCAGGTCTG
TAGACTCCCTCCGTTCCCATCCATCTGTTGAACATCGCGTTTGGCATCTG
ATACCTGCTGGCTTCTCAGGAGTATACCGTGCCATCTGGAGCGTTTGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_f03.b1 MSMg01no199_f03.b1 CHROMAT_FILE:
MSMg01no199_f03.b1 PHD_FILE: MSMg01no199_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:50 2005
         (239 letters)



>mm_chr12_30540968_30541606
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggaatgctgccccatcctgatgtgctggccaagatccaagtgcagttggttacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caaaggaatgctgccccatcctgatgtgctggccaagatccaagtgcagttggttacatt 380

                                                                       
Query: 61  ttgatcatgagggaaatgtgggttgaagccatagcaaaaagacgcctgagcaaagtgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgatcatgagggaaatgtgggttgaagccatagcaaaaagacgcctgagcaaagtgtgc 320

                                                                       
Query: 121 tggattgttgctcctaagggtgttgctttgagctgctaaagctatttgtccatcaggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggattgttgctcctaagggtgttgctttgagctgctaaagctatttgtccatcaggcac 260

                                                                      
Query: 181 tgatttaaatgctgctagaccgtaaggcaagaggaagccctcgagctgctcacagtttg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgatttaaatgctgctagaccgtaaggcaagaggaagccctcgagctgctcacagtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no199_f03.g1 MSMg01no199_f03.g1 CHROMAT_FILE:
MSMg01no199_f03.g1 PHD_FILE: MSMg01no199_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:50 2005
         (493 letters)



>mm_chr12_30407860_30408752
          Length = 893

 Score =  938 bits (485), Expect = 0.0
 Identities = 491/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctgaggacacagtaaggcaggtgagttactgactgtggaaggaaacagatacaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctgaggacacagtaaggcaggtgagttactgactgtggaaggaaacagatacaggtg 260

                                                                       
Query: 61  agaagcatggtctattgcaagcatggctcaccaaccagcagtgtcctctctattagtact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagcatggtctattgcaagcatggctcaccaaccagcagtgtcctctctattagtact 320

                                                                       
Query: 121 ctggggtgttccctagcatctacacgttgtccaatagggctgtgcaaggcatgggttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggggtgttccctagcatctacacgttgtccaatagggctgtgcaaggcatgggttgat 380

                                                                       
Query: 181 aggtatgctcagaaggtgcactctccattctctagagtagaaactaatagtaggtacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtatgctcagaaggtgcactctccattctctagagtagaaactaatagtaggtacagc 440

                                                                       
Query: 241 atccttagacatccatagagccacattcatttgttcaggaatttggggataggaatggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccttagacatccatagagccacattcatttgttcaggaatttggggataggaatggct 500

                                                                       
Query: 301 agcacacttgaaagtctttccctctgggacctgaaaacaatgccaatatatattatattg 360
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 501 agcacacttgaaagtctttccctctgggacctgaaaacaatgaaaatatatattatattg 560

                                                                       
Query: 361 tctaaaatcagtgttctgttattcattgcaatgggctatcagaagtcatagtttgtgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaaaatcagtgttctgttattcattgcaatgggctatcagaagtcatagtttgtgcat 620

                                                                       
Query: 421 ctggtgctagactctttcaagtttggggactcataggagtgtgtcctgggtcccaggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggtgctagactctttcaagtttggggactcataggagtgtgtcctgggtcccaggcag 680

                        
Query: 481 ggtaagtccatca 493
           |||||||||||||
Sbjct: 681 ggtaagtccatca 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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