BAC Information

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BAC

Clone NameMSMg01-204D08
Chromosome12 (Build37)
Map Location 87,172,889 - 87,267,354
singlet/doubletdoublet
Overlap geneTtll5
Upstream geneLtbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204D08.T7 (MSMg01no204_d08.b1)MSMg01-204D08.TJ (MSMg01no204_d08.g1)
ACCAG388681AG388682
length736763
length of high quality
(start - end)		631 (45 - 675)343 (77 - 419)
definitionCHROMAT_FILE: MSMg01no204_d08.b1 PHD_FILE: MSMg01no204_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:39 2005CHROMAT_FILE: MSMg01no204_d08.g1 PHD_FILE: MSMg01no204_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,266,728 - 87,267,354)(87,172,889 - 87,173,229)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAATAGATTACCGGGTAAACTGTACCTACAGGTTAGTGTGCGGAT
ACATATGGTGCCACTAGCCTAGCCTTTCCATGTAATTTCAGAAAGGCTAC
GTCAACTTCCAGGACTCAGCTGTCCCTCTTATATAGTGGCTATATTTTTT
CTCCTGAAAATATTTTTTTAAAATGGATGCTAGAAACTTAAATATAAGAC
ACTTTGAAAAAAATTCTAATTAAATAGTCTATCACCTAGGTGTGAAATCA
TTTCCCTGTTTCAAACATCTCAGAGAAGAAAATCTAACACTTCCAAAACA
GAAATACAAGTTGTCATTTTAAATTCACAGTATAAGTTCATTTTCAAATG
GTCCACTCACCATTGTCTGCAGGCACTATACTATAATACAGTTATAACAC
ACAGCAAGACCTTGGGTATACTCAAGCACAAAAGAAATATGCAGTTTCCT
AAGAGTTGAATATAGGCATCGGCCCTAATGATAAGTAGATTTTCAGCCAA
GCTGGACTGACAACAAGAGTCACAAAGGGGATGGTGCTGTCAAGAGAACA
GAGCAAGGCAGACTGGCCCATTCCTAACAGCGTCTGATGCAGCAGCACAG
AAGGCTATTGACTCACCTTGTTGTACACACCGANTAAGTCTCCTAGCTGG
TGGGCAAGGATTCTCCTGCGCTCCAGAAGTGCCAAC

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTTGGTTTTCCATGCTGAGG
CTATTTTGACAAAGGACAACAATATTCGAGTAATTGGAGGTAGGTGTAAC
CTCTGCTATAGAAAGGGGATCTGGGTATGACCCTGACCACTCTAGAACAA
GTTACTATGACACAGACAGAGAGGCCTTGGCCATGGAACACGCATTGAGC
TGTTACTTCAAATATTATTCATAGTTTCTTAAATTGTTTCCTGAGTTTCT
CAAAATGATGTGTATGTGTTTATTTTTCAGGTTATATTTACTTAACATGT
CCCAGAGTTTACCATTTTGACCACTTTAGAGTGTGCAATCAATTGGTGTT
TGGGTCATTCATATTTACCCCCCGTGTCTAGCTTAAGGACATTTGCATCA
CTTGGGCAGCCACTCCCTCCTCTCTATACTGTCAGTGCCTTATGACTGCT
ACTCTTTCTGCTTCTATACATTTTCCGATGTCGTTTTGACTACTTATTCT
GTGCTTCCCTTTCCCCGTTTCCCTTTTCCCCTTTTTTACCTTTTCCCCCC
TTATCTGTTCTCCCTTTCCCCTTTATCCCCTTTTCGCTTCATTCCTTCCT
TCTTTTTTTCATATTTCCTTTTTTCAACTCTTTTTTTCCACTTTTTTATA
TATTACTCTATTTTTTTTTTCTCATTTTTCTCTAGTTGTTCTTCACTCTC
TCCTCCTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_d08.b1 MSMg01no204_d08.b1 CHROMAT_FILE:
MSMg01no204_d08.b1 PHD_FILE: MSMg01no204_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:39 2005
         (631 letters)



>mm_chr12_87266524_87267554
          Length = 1031

 Score = 1174 bits (607), Expect = 0.0
 Identities = 622/627 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaatagattaccgggtaaactgtacctacaggttagtgtgcggatacatatgg 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaattctcaatagataacagggtaaactgtacctacaggttagtgtgcggatacatatgg 772

                                                                       
Query: 65  tgccactagcctagcctttccatgtaatttcagaaaggctacgtcaacttccaggactca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgccactagcctagcctttccatgtaatttcagaaaggctacgtcaacttccaggactca 712

                                                                       
Query: 125 gctgtccctcttatatagtggctatattttttctcctgaaaatatttttttaaaatggat 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 711 gctgtccctcttatatagtggctatattttttctcctgaaaatattattttaaaatggat 652

                                                                       
Query: 185 gctagaaacttaaatataagacactttgaaaaaaattctaattaaatagtctatcaccta 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 651 gctagaaacttaaatataagacactttgaaaaaaattctaattaaatagtgtatcaccta 592

                                                                       
Query: 245 ggtgtgaaatcatttccctgtttcaaacatctcagagaagaaaatctaacacttccaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggtgtgaaatcatttccctgtttcaaacatctcagagaagaaaatctaacacttccaaaa 532

                                                                       
Query: 305 cagaaatacaagttgtcattttaaattcacagtataagttcattttcaaatggtccactc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cagaaatacaagttgtcattttaaattcacagtataagttcattttcaaatggtccactc 472

                                                                       
Query: 365 accattgtctgcaggcactatactataatacagttataacacacagcaagaccttgggta 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 accattgtctgtaggcactatactataatacagttataacacacagcaagaccttgggta 412

                                                                       
Query: 425 tactcaagcacaaaagaaatatgcagtttcctaagagttgaatataggcatcggccctaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tactcaagcacaaaagaaatatgcagtttcctaagagttgaatataggcatcggccctaa 352

                                                                       
Query: 485 tgataagtagattttcagccaagctggactgacaacaagagtcacaaaggggatggtgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgataagtagattttcagccaagctggactgacaacaagagtcacaaaggggatggtgct 292

                                                                       
Query: 545 gtcaagagaacagagcaaggcagactggcccattcctaacagcgtctgatgcagcagcac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtcaagagaacagagcaaggcagactggcccattcctaacagcgtctgatgcagcagcac 232

                                      
Query: 605 agaaggctattgactcaccttgttgta 631
           |||||||||||||||||||||||||||
Sbjct: 231 agaaggctattgactcaccttgttgta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no204_d08.g1 MSMg01no204_d08.g1 CHROMAT_FILE:
MSMg01no204_d08.g1 PHD_FILE: MSMg01no204_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:40 2005
         (343 letters)



>mm_chr12_87172689_87173431
          Length = 743

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttttggttttccatgctgaggctattttgacaaaggacaacaatattcgagtaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttttggttttccatgctgaggctattttgacaaaggacaacaatattcgagtaattg 260

                                                                       
Query: 61  gaggtaggtgtaacctctgctatagaaaggggatctgggtatgaccctgaccactctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtaggtgtaacctctgctatagaaaggggatctgggtatgaccctgaccactctaga 320

                                                                       
Query: 121 acaagttactatgacacagacagagaggccttggccatggaacacgcattgagctgttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagttactatgacacagacagagaggccttggccatggaacacgcattgagctgttac 380

                                                                       
Query: 181 ttcaaatattattcatagtttcttaaattgtttcctgagtttctcaaaatgatgtgtatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaaatattattcatagtttcttaaattgtttcctgagtttctcaaaatgatgtgtatg 440

                                                                       
Query: 241 tgtttatttttcaggttatatttacttaacatgtcccagagtttaccattttgaccactt 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttatttttcaggttatgtttacttaacatgtcccagagtttaccattttgaccactt 500

                                                    
Query: 301 tagagtgtgcaatcaattggtgtttgggtcattcatattta 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagagtgtgcaatcaattggtgtttgggtcattcatattta 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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