MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-204F16
Chromosome	12 (Build37)
Map Location	70,283,462 - 70,283,751
singlet/doublet	singlet
Overlap gene	Rpl36al
Upstream gene	LOC100040696, LOC665967, LOC665973, Rps29, Ppil5
Downstream gene	Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100040696 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040696
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC665967 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665967
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 105 ESTs, 5 Proteins pseudo : _no_value

name	LOC665973 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665973
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Rps29 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20090 MGI:107681
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppil5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69706 MGI:1916956
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl36al (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66483 MGI:1913733
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mgat2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217664 MGI:2384966
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110034A24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109065 MGI:1923566
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9330151L19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:414085 MGI:3041168
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Pole2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18974 MGI:1197514
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Klhdc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:271005 MGI:2672853
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Klhdc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69554 MGI:1916804
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sdccag1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66244 MGI:1918305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arf6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11845 MGI:99435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040856 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040856
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC100040862 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Gm71 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207965 MGI:2684917
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sos2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20663 MGI:98355
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 71 ESTs, 1 Protein

name	LOC100040879 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040879
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins pseudo : _no_value

name	L2hgdh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217666 MGI:2384968
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp5s (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68055 MGI:1915305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdkl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71091 MGI:1918341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Map4k5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:399510 MGI:1925503
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Spg3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73991 MGI:1921241
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622339 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622339 MGI:3646088
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sav1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64010 MGI:1927144
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040999 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040999
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein

name	Nin (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18080 MGI:105108
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	ENSMUSG00000056391 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:791312 MGI:3641988
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Gm804 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328121 MGI:2685650
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	LOC100040696 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263264 GeneID:100040696
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040696 transcript_id : XM_001474784.1

name	Rps29 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6677802 GeneID:20090 MGI:107681
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S29 transcript_id : NM_009093.1

name	Ppil5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487160 GeneID:69706 MGI:1916956
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peptidylprolyl isomerase (cyclophilin) like 5 transcript_id : NM_001081406.1

name	Rpl36al (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368433 GeneID:66483 MGI:1913733
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L36a-like transcript_id : NM_025589.2

name	Mgat2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122520 GeneID:217664 MGI:2384966
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mannoside acetylglucosaminyltransferase 2 transcript_id : NM_146035.1

name	1110034A24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66793420 GeneID:109065 MGI:1923566
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110034A24 gene transcript_id : NM_027269.3

name	Pole2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803017 GeneID:18974 MGI:1197514
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polymerase (DNA directed), epsilon 2 (p59 subunit) transcript_id : NM_011133.2

name	Klhdc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803414 GeneID:271005 MGI:2672853
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kelch domain containing 1 transcript_id : NM_178253.3

name	Klhdc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367655 GeneID:69554 MGI:1916804
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kelch domain containing 2 transcript_id : NM_027117.2

name	Sdccag1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32130520 GeneID:66244 MGI:1918305
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serologically defined colon cancer antigen 1 transcript_id : NM_025441.2

name	Arf6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47106055 GeneID:11845 MGI:99435
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-ribosylation factor 6 transcript_id : NM_007481.2

name	LOC100040856 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263270 GeneID:100040856
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to cyclic nucleotide gated channel beta 1 transcript_id : XM_001475395.1

name	LOC100040862 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263272 GeneID:100040862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100040862 transcript_id : XM_001475411.1

name	Gm71 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:98986328 GeneID:207965 MGI:2684917
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 71, (NCBI) transcript_id : NM_001033236.2

name	Sos2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263275 GeneID:20663 MGI:98355
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 71 ESTs, 1 Protein product : Son of sevenless homolog 2 (Drosophila) transcript_id : XM_127051.8

name	L2hgdh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703883 GeneID:217666 MGI:2384968
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : L-2-hydroxyglutarate dehydrogenase transcript_id : NM_145443.1

name	Atp5s (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13386039 GeneID:68055 MGI:1915305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s transcript_id : NM_026536.1

name	Cdkl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366600 GeneID:71091 MGI:1918341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin-dependent kinase-like 1 (CDC2-related kinase) transcript_id : NM_183294.2

name	Map4k5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:77736532 GeneID:399510 MGI:1925503
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs product : mitogen-activated protein kinase kinase kinase kinase 5 transcript_id : NM_024275.2

name	Spg3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348381 GeneID:73991 MGI:1921241
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spastic paraplegia 3A homolog (human) transcript_id : NM_178628.4

name	EG622339 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486830 GeneID:622339 MGI:3646088
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG622339 transcript_id : NM_001081297.1

name	Sav1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130409 GeneID:64010 MGI:1927144
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : salvador homolog 1 (Drosophila) transcript_id : NM_022028.2

name	LOC100040999 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263281 GeneID:100040999
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein product : similar to Spg3a protein transcript_id : XM_001475450.1

name	Nin (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125346100 GeneID:18080 MGI:105108
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ninein transcript_id : NM_001081453.1

name	Nin (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125346155 GeneID:18080 MGI:105108
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ninein transcript_id : NM_008697.2

name	ENSMUSG00000056391 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263277 GeneID:791312 MGI:3641988
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, ENSMUSG00000056391 transcript_id : XM_001475522.1

name	Gm804 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263283 GeneID:328121 MGI:2685650
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : gene model 804, (NCBI), transcript variant 1 transcript_id : XM_001475466.1

name	Gm804 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263285 GeneID:328121 MGI:2685650
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : gene model 804, (NCBI), transcript variant 2 transcript_id : XM_001475489.1

name	LOC100040696 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263265 GeneID:100040696
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474834.1

name	Rps29 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677803 GeneID:20090 MGI:107681
definition	GO_component : GO:0005843 - cytosolic small ribosomal subunit (sensu Eukaryota) [Evidence ISS]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence ISS] GO_process : GO:0006412 - protein biosynthesis [Evidence ISS]; GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 note : S29 ribosomal protein product : ribosomal protein S29 protein_id : NP_033119.1

name	Ppil5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487161 GeneID:69706 MGI:1916956
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : peptidylprolyl isomerase (cyclophilin)-like 5 protein_id : NP_001074875.1

name	Rpl36al (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385038 CCDS:CCDS25946.1 GeneID:66483 MGI:1913733
definition	codon_start : 1 product : ribosomal protein L36a-like protein_id : NP_079865.1

name	Mgat2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122521 CCDS:CCDS25947.1 GeneID:217664 MGI:2384966
definition	GO_component : GO:0005795 - Golgi stack [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008455 - alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0009312 - oligosaccharide biosynthesis [Evidence IEA]; GO:0018279 - protein amino acid N-linked glycosylation via asparagine [Evidence IMP] codon_start : 1 product : mannoside acetylglucosaminyltransferase 2 protein_id : NP_666147.1

name	1110034A24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66793421 CCDS:CCDS25948.1 GeneID:109065 MGI:1923566
definition	codon_start : 1 product : hypothetical protein LOC109065 protein_id : NP_081545.3

name	Pole2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468927 GeneID:18974 MGI:1197514
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006260 - DNA replication [Evidence IEA] codon_start : 1 note : DNA polymerase epsilon, subunit 2; DNA polymerase epsilon small subunit product : DNA polymerase epsilon subunit 2 protein_id : NP_035263.1

name	Klhdc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30142701 CCDS:CCDS25949.1 GeneID:271005 MGI:2672853
definition	codon_start : 1 product : kelch domain containing 1 protein_id : NP_839984.1

name	Klhdc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312320 CCDS:CCDS25950.1 GeneID:69554 MGI:1916804
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 exception : mismatches in translation product : kelch domain containing 2 protein_id : NP_081393.1

name	Sdccag1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32130521 CCDS:CCDS25951.1 GeneID:66244 MGI:1918305
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : serologically defined colon cancer antigen 1 protein_id : NP_079717.2

name	Arf6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680724 CCDS:CCDS25952.1 GeneID:11845 MGI:99435
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005768 - endosome [Evidence TAS]; GO:0005622 - intracellular [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence TAS]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0015031 - protein transport [Evidence TAS]; GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : ADP-ribosylation factor 6 protein_id : NP_031507.1

name	LOC100040856 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263271 GeneID:100040856
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475445.1

name	LOC100040862 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263273 GeneID:100040862
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475461.1

name	Gm71 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:98986329 GeneID:207965 MGI:2684917
definition	codon_start : 1 product : hypothetical protein LOC207965 protein_id : NP_001028408.2

name	Sos2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263276 GeneID:20663 MGI:98355
definition	codon_start : 1 product : Son of sevenless homolog 2 protein_id : XP_127051.8

name	L2hgdh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703884 CCDS:CCDS25953.1 GeneID:217666 MGI:2384968
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS]; GO:0031305 - integral to mitochondrial inner membrane [Evidence ISS]; GO:0005739 - mitochondrion [Evidence ISS] GO_function : GO:0047545 - 2-hydroxyglutarate dehydrogenase activity [Evidence ISS]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0044267 - cellular protein metabolism [Evidence ISS]; GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : L-2-hydroxyglutarate dehydrogenase protein_id : NP_663418.1

name	Atp5s (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386040 CCDS:CCDS25954.1 GeneID:68055 MGI:1915305
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA] GO_function : GO:0015078 - hydrogen ion transporter activity [Evidence ISS] [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA] [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s protein_id : NP_080812.1

name	Cdkl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34304105 CCDS:CCDS25955.1 GeneID:71091 MGI:1918341
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 product : cyclin-dependent kinase-like 1 (CDC2-related kinase) protein_id : NP_899117.1

name	Map4k5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77736533 GeneID:399510 MGI:1925503
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence ISS] [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS] [Evidence IEA]; GO:0005083 - small GTPase regulator activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007243 - protein kinase cascade [Evidence ISS]; GO:0006950 - response to stress [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : mitogen-activated protein kinase kinase kinase kinase 5 isoform 2 protein_id : NP_077237.2

name	Spg3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519971 GeneID:73991 MGI:1921241
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 product : atlastin protein_id : NP_848743.1

name	EG622339 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486831 GeneID:622339 MGI:3646088
definition	GO_function : GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA] GO_process : GO:0006006 - glucose metabolism [Evidence IEA]; GO:0006096 - glycolysis [Evidence IEA] codon_start : 1 product : predicted gene, EG622339 protein_id : NP_001074766.1

name	Sav1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11528514 CCDS:CCDS25956.1 GeneID:64010 MGI:1927144
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : WW domain-containing protein 3; WW domain-containing protein 4 product : salvador homolog 1 protein_id : NP_071311.1

name	LOC100040999 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263282 GeneID:100040999
definition	codon_start : 1 product : similar to Spg3a protein protein_id : XP_001475500.1

name	Nin (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125346101 GeneID:18080 MGI:105108
definition	GO_component : GO:0005813 - centrosome [Evidence ISS]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0051642 - centrosome localization [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : ninein isoform 1 protein_id : NP_001074922.1

name	Nin (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125346156 GeneID:18080 MGI:105108
definition	GO_component : GO:0005813 - centrosome [Evidence ISS]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0051642 - centrosome localization [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : ninein isoform 2 protein_id : NP_032723.2

name	ENSMUSG00000056391 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263278 GeneID:791312 MGI:3641988
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475572.1

name	Gm804 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263284 GeneID:328121 MGI:2685650
definition	codon_start : 1 product : similar to C14ORF29 isoform 1 protein_id : XP_001475516.1

name	Gm804 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263286 GeneID:328121 MGI:2685650
definition	codon_start : 1 product : similar to C14ORF29 isoform 2 protein_id : XP_001475539.1

name	LOC665973 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665973
definition	number : 1 pseudo : _no_value

name	LOC665967 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263266 GeneID:665967
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 105 ESTs, 5 Proteins product : similar to ATP binding protein associated with cell differentiation pseudo : _no_value transcript_id : XR_031928.1

name	9330151L19Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149263269 GeneID:414085 MGI:3041168
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : RIKEN cDNA 9330151L19 gene transcript_id : XR_035259.1

name	LOC100040879 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263274 GeneID:100040879
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins product : similar to Chloride intracellular channel 4 pseudo : _no_value transcript_id : XR_032101.1

clone name	MSMg01-153I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134K20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-448G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128M03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-271K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010I10
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-204F16.T7 (MSMg01no204_f16.b1)	MSMg01-204F16.TJ (MSMg01no204_f16.g1)
ACC	AG388767	AG388768
length	886	749
length of high quality (start - end)	42 (78 - 119)	290 (77 - 366)
definition	CHROMAT_FILE: MSMg01no204_f16.b1 PHD_FILE: MSMg01no204_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:51 2005	CHROMAT_FILE: MSMg01no204_f16.g1 PHD_FILE: MSMg01no204_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:51 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCAGAGGATCCGCC GGAATTCAGTTTCCTGCACCTCTAATTGGGCAGTTTACAGCACCTGTAAC TCCAGCCATGTAACTCAGNCTATGGCCCCGCAAAAATAGTTGNNNNNNNN ATANNNANNNANANNNNANNNAAAAAAANAATAATAAAAAAANNAAAAAA AAAAAAAAAAAAAAAAAAAAATATAAAAAAAAAAAAAAANATATATATTT TTTATATTTTTATTATTACANTATATATAATTATATAAAATTTATTAACA AAATTAACAATAATAAAAATTATAAACCAACAACAACAATATCTTTTTTC CCAAATCCCATCTCCTCTCTCCTCTACCCCCTATTTTTTTTTTTCCCCCC CCCCCCCCCCCCCTAACCCTATCTTTACCTCCATACTCTTTATTTTCTCT GAACATATCCCCCAAAAAAAAAATAAAAAATAAAAATTTTCTTTTTTCAA ACTATAATTTACCCCTCTCTCTCCTCCACCACCCCTCTCTCCCCAACACC CAACACTCCCCCCCCAACACCTTATCCCTCATCCCCCCACCACTCCCTAT AACATTATCCCCCTCTCTTAATCCTCACCTCTTCTCCCCACCTATTTCCC CACTTCCCCACCCCTTAACTTCTTATAACCATAACTCATATTCTTTAATC TCCTCTCATACCCCATTTCCTCCTATCCACATACCTCCACCTCCCCCACT ATTCTTCAACACCCCTTCCCCTTTAATCCCCCTTCCCTACCCCTCTATTC TTCCCCTCTATTCACACCATAACATATAATTAATCTCCTCCTTTCTAACT TATCCATTATCCACTTCTACTTTCTCTCCTCACCCG	ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXTATGACCATCACATATGTTCTGTG CCCATTATTCTGTAGCTATTGCCCATCTGTATGACTTCTTGTAGGGCACT TAGTACACACTTTGCCTACCATGCAGAAAGCACTGGGTTCAACCCAACGC AGCACCATAGAAATAGGATATGGTGCAATTCTGTACTTCTAGTATTTAGG AGGCAGAGGTAGACCCAGACTCAAATTATGTTTGAAAATAAAACCCCCTA AATATGCAATCCTACTGAGAATCATTACACAAGGCTTGGTATCATTAACA GTAACTTTATTCTCTAGCACCCCATTTCTCTACTGCTTCAGTATTTTCCT CTCTGAGAATTAACNNACTTCTGTGAAANAAAAGANANATTCATATTCTT GTTGNCCCCAGCCCAAAACGCTTGCTTCTCCTTTTGCTCTCCACCTCCCC GCACCTTTATTTAATTCCAATCTTACTTCTTACTATTCACCTCCATTTAA TATTTCTATTCTTACTCTTTCCTCCCAATTGCTCTCATTTCTTTTCCTCC TTTACCCTTTACCCACTATCTACTCTTCTCAAACTTACAACTCACCTCAC TTCTATTTTCATCAACATCCATACCCATCATCACTTACCCCATTTTTCTT CCTACCCCTTCACCTGTTTTCTTTTTCCGTTCCTTACTCCTCTTATTAG
quality values	Open. Hide. 8 8 8 8 9 10 13 18 22 17 21 25 23 19 18 18 32 34 34 37 28 26 26 28 30 19 19 18 18 15 19 9 7 7 6 7 6 8 8 8 10 10 10 9 11 15 15 7 9 9 9 16 22 22 22 29 30 29 31 18 27 10 8 6 6 6 6 9 7 13 6 6 6 6 6 10 12 13 24 30 39 39 43 48 59 37 37 37 36 36 18 9 9 9 6 6 29 33 44 47 33 33 33 28 28 33 37 47 44 44 59 59 47 37 37 19 17 3 0 3 9 11 9 9 9 7 9 9 7 7 8 9 19 21 24 13 13 10 10 9 9 3 0 0 0 0 0 0 0 0 3 9 3 0 0 0 3 0 0 0 3 0 3 0 0 0 0 3 0 0 0 3 8 8 9 7 7 3 0 3 6 7 8 8 7 9 9 9 9 9 9 3 0 0 3 6 6 9 10 10 10 10 8 8 7 7 8 6 6 6 6 6 6 6 9 9 9 9 7 7 7 6 8 6 6 6 6 9 9 9 9 9 9 11 8 8 7 7 3 0 3 6 6 6 6 6 9 9 9 10 11 11 9 9 9 8 8 8 8 8 8 10 10 8 8 8 6 7 7 3 0 3 6 6 6 10 7 6 6 8 10 13 10 7 7 7 8 8 9 9 9 10 10 8 8 8 8 8 8 7 7 7 9 9 9 9 9 8 8 7 8 8 8 9 8 8 8 6 6 6 8 10 7 8 8 8 9 8 6 6 6 6 6 6 8 6 6 8 8 8 9 9 8 8 9 9 12 10 13 13 15 10 10 10 9 10 8 13 7 6 8 8 9 9 10 10 10 12 10 12 12 10 10 10 10 10 13 11 21 8 8 8 8 8 8 12 15 17 26 27 32 9 9 9 9 10 15 22 25 28 30 30 30 30 24 24 25 26 29 20 15 15 10 10 10 10 11 8 10 8 8 8 8 7 6 8 6 6 8 8 8 10 10 8 8 10 8 8 8 10 10 10 11 21 8 8 6 8 8 7 3 3 9 9 7 7 8 8 8 11 31 22 15 14 18 30 34 42 41 39 22 17 8 8 9 21 21 15 15 9 8 8 8 9 17 8 8 8 8 10 10 10 11 11 10 11 12 12 8 8 8 8 10 10 8 8 8 8 8 12 9 9 10 11 9 10 10 10 10 8 11 10 14 12 10 10 6 6 8 8 10 8 10 8 8 8 10 10 8 6 6 12 10 10 10 10 10 11 11 10 9 9 8 8 6 6 6 6 12 15 22 25 15 12 8 8 8 10 11 11 8 8 8 8 8 8 9 8 8 8 8 8 11 15 17 28 20 14 11 11 12 15 12 10 11 11 8 8 8 9 8 8 7 6 8 8 13 12 13 12 15 13 8 9 9 10 10 12 9 9 11 11 16 11 11 10 12 12 11 11 9 9 9 13 16 23 11 11 9 9 6 10 6 6 6 8 13 19 24 19 10 8 8 8 8 8 8 8 8 7 12 7 9 9 10 12 15 12 10 8 6 6 10 6 6 6 8 8 12 10 10 9 12 9 11 11 9 8 8 8 8 8 15 9 8 8 8 8 8 8 10 8 6 6 6 6 8 6 6 8 8 14 14 11 10 10 10 8 10 6 6 8 8 8 8 8 8 10 6 6 10 8 8 8 8 8 9 9 9 8 10 8 9 9 8 15 11 11 11 16 13 13 12 12 10 11 10 10 10 10 11 12 10 9 9 9 9 10 10 11 9 6 8 8 8 8 8 15 24 12 11 12 12 9 8 8 6 6 6 6 11 11 10 10 12 10 13 8 8 6 6 6 8 10 11 11 10 10 9 9 6 7 6 7 8 8 12 8 8 8 10 10 10 8 8 8 8 12 10 10 10 11 11 10 13 12 9 9 10 10 10 10 10 13 10 9 9 9 9 8 8 8 8 8 8 10 11 11 11 11 7 6 9 9 7 10 8 8 6 6 6 8 10 9 7 11 8 8 12 12 8 8 8 9 9 9	Open. Hide. 6 6 6 8 10 8 6 6 8 17 17 35 32 37 41 36 37 44 39 39 47 47 50 50 50 50 50 41 47 41 32 32 15 14 13 13 13 18 22 19 26 26 31 30 48 53 57 57 53 53 50 50 50 53 53 53 53 53 48 35 34 20 20 22 26 36 30 28 28 28 23 41 42 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 53 53 53 53 53 53 59 59 57 57 57 53 53 50 59 59 46 47 59 27 27 10 10 10 10 11 14 25 28 40 41 48 50 50 53 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 68 57 68 68 57 57 57 48 48 57 59 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 48 48 44 44 43 57 57 57 57 57 57 68 68 68 68 68 57 59 43 41 41 43 59 59 59 57 48 48 48 48 48 48 48 54 57 57 57 48 48 48 59 59 59 59 48 48 48 48 48 48 47 47 47 47 48 59 59 59 59 59 48 46 41 34 32 16 23 15 11 9 9 9 9 10 15 29 35 37 41 48 48 44 44 36 36 36 43 43 43 48 46 43 43 43 43 43 43 43 43 47 59 48 48 48 34 34 37 39 31 27 17 11 11 12 12 11 11 12 12 14 14 12 15 12 12 13 23 17 23 23 15 15 11 18 16 19 12 14 11 14 18 28 32 37 39 39 32 16 10 8 8 8 8 8 8 8 8 8 6 3 0 0 3 6 6 6 8 8 8 6 6 6 8 3 0 3 17 19 8 8 3 0 3 0 3 6 9 10 12 8 6 6 12 12 19 14 8 8 8 3 0 3 13 10 10 19 11 10 13 12 19 11 12 10 8 8 8 8 8 8 10 10 12 11 13 13 12 12 12 10 12 8 8 8 8 11 10 10 10 10 8 10 10 13 11 11 8 8 8 10 8 8 12 12 15 11 9 9 9 9 9 10 11 8 8 10 10 9 9 10 12 13 11 11 11 8 6 6 6 8 8 10 6 8 9 9 10 8 8 11 11 8 8 8 10 10 10 15 12 10 10 7 6 8 8 8 8 12 9 9 9 9 9 12 10 11 10 10 12 13 12 12 14 10 8 8 8 8 8 8 8 10 8 8 10 10 10 10 13 10 10 10 8 9 9 16 15 19 8 8 8 8 18 13 12 9 10 10 8 8 8 6 6 10 10 8 8 6 6 8 8 8 8 8 8 8 8 13 8 8 10 15 8 8 8 8 9 10 10 10 10 10 15 10 10 11 10 8 7 9 9 10 12 11 8 8 8 8 8 8 8 8 8 13 8 8 8 8 8 8 8 9 8 8 8 8 7 7 8 8 10 10 10 10 15 15 11 11 12 24 15 18 14 14 13 8 8 8 10 8 8 8 8 13 10 8 8 10 10 11 7 7 7 13 11 12 8 6 8 8 10 8 10 8 10 8 10 11 8 12 6 6 8 15 9 10 10 9 9 9 6 6 6 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no204_f16.g1 MSMg01no204_f16.g1 CHROMAT_FILE:
MSMg01no204_f16.g1 PHD_FILE: MSMg01no204_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:51 2005
         (290 letters)



>mm_chr12_70283262_70283951
          Length = 690

 Score =  491 bits (254), Expect = e-143
 Identities = 281/290 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaccatcacatatgttctgtgcccattattctgtagctattgcccatctgtatgact 60
           |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||
Sbjct: 201 tatgaccatcacatatgttctgtgcccattattctgtagctactgcttatctgtatgact 260

                                                                       
Query: 61  tcttgtagggcacttagtacacactttgcctaccatgcagaaagcactgggttcaaccca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tcttgtagggcacttagtacacactttgcctagcatgcagaaagcactgggttcaaccca 320

                                                                       
Query: 121 acgcagcaccatagaaataggatatggtgcaattctgtacttctagtatttaggaggcag 180
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacagcaccttagaaataggatatggtgcaattctgtacttctagtatttaggaggcag 380

                                                                       
Query: 181 aggtagacccagactcaaattatgtttgaaaataaaaccccctaaatatgcaatcctact 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 aggtagacccagactcaaattatgtttgaaaacaaaaccccctaaatatgcaatcctact 440

                                                             
Query: 241 gagaatcattacacaaggcttggtatcattaacagtaactttattctcta 290
           ||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaatcaaaacacaaggcttggtatcattaacagtaactttattctcta 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information