BAC Information

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BAC

Clone NameMSMg01-205B12
Chromosome12 (Build37)
Map Location 75,295,378 - 75,295,793
singlet/doubletsinglet
Overlap geneSyt16
Upstream geneMnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1
Downstream gene1700086L19Rik, Dbpht2, LOC671971, Kcnh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205B12.T7 (MSMg01no205_b12.b1)MSMg01-205B12.TJ (MSMg01no205_b12.g1)
ACCAG389207AG389208
length784740
length of high quality
(start - end)
---417 (77 - 493)
definitionCHROMAT_FILE: MSMg01no205_b12.b1 PHD_FILE: MSMg01no205_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:53 2005CHROMAT_FILE: MSMg01no205_b12.g1 PHD_FILE: MSMg01no205_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGTGTTGGACTAATGATAAGNTGGCGTACCCCGGCCGACNTAAAATCAA
AAATGGGGCGCGANNAGAGCACAATTCGAAAAGAANGNGGANNNNGNNAA
TGCCAAAAAAGAGGGANNNNNNNNNNANGNNNNNGNNNNNNNNNANNANN
NNATTTACCCCAAAAAGGGGGGGAGNANNNANANAGNNGGGNNAGAGGAA
GGAAGAAAGAGAAAGNAAGAAAAAAGAAGGAAGAGAAGAAAGGAGAAAAA
GAAAGAAAGGGAAAGGAAAAANAGGAGAGAAAAAAAGGATTTTTTTNAAA
AAAAAGAAGGGAATAAATTGGGGATATAAAATAAAAAGGTGAGGTGGGAT
AAGTGATTTTATGGTTTTAAANGAAAAGGNAGAAAAAAAAGAAAGGATTG
TGTTCCCCGCGCATCATGATGAATAGTGTAGGAAATATGATTATGGAGTA
AGCCCCCACGAATATTAGAGTAAGAGTAGAAGGTTGGAGTATGAACCATA
GGAAAAAATAAGTGGATAAAACGGGAGGAGTATAATTTTTGGACTGATTC
TCTCCATGGCTGCATGCTTTACCTTGCTTAAAGATGAATGATTTTTTGGA
GATTGGGCTTATCTTGAATTGGTGTAAATATAAATTAAATATGGTTCGTT
GGTTCTTGGGAATTTATCGAAGAAAAAGTGAGGGTTGGTACAATCTTTTT
TTTTTTTTTTTTTTTTAGAAAACATTATAATTATTATTTTTATGTGATGG
CAATTTTTCTTGGGGTTTTTGGGGTTAATATTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGCAGTTGTTCCCAGGATGT
AGAGAACAACTGTTTAGTGTTTTAGTCCCGAAAACATGGGTTGTTCTTAG
TAGTGCTTTACTTACTCCAAATTACTGCTTTGTTTTCACCAAATACACAC
ATTCACGTGTGCATATACATGCTGTTTTCTAATTAAACTACTCTGCTGAT
CTCCTTGCCATATTGAAATGGCTGTCAGGTAAAATCACATCTATTTATTT
ATTTATTCATGTGCGTGCACATGTGTGTGTGTGCTATGTTGTGCTCATGT
GGAGGCTAGAGGGGAGTTAGTGATAATTGCATCTCTCCTACCATGTGGGT
CCCAGGGATGAAACTCCCCACCCGCCTTGACCAACTGATACATCCCCCTA
GTCCTTCTTACCAATTTTGAATCCATTTAATGAACATGAAGACAAAGAAA
GGAAGGATAACATGCATCGATATGTACATAAGTATATGCTAATTTATAGC
TCAGGGCACAGTAATGATATGAGATGATTACACCTGATCCGATAATCCAT
GCCCCTCTTTTTTCACCACCTTGTTGTTCTTATGCTCTCCTTACCTTTAT
ACCCCTCCTCCTTTTACCCCTGTTCCATATTCCCCATATCCTATAGCCCA
TCCAATTCTCTTTGACCAGTCTCCGATTCGTTCATCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_b12.g1 MSMg01no205_b12.g1 CHROMAT_FILE:
MSMg01no205_b12.g1 PHD_FILE: MSMg01no205_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:53 2005
         (417 letters)



>mm_chr12_75295178_75295994
          Length = 817

 Score =  735 bits (380), Expect = 0.0
 Identities = 407/416 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgagcagttgttcccaggatgtagagaacaactgtttagtgttttagtcccgaaaaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agtgagcagttgttcccaggatgtagagaacaactgtttagtgttttagttccgaaaaca 260

                                                                       
Query: 61  tgggttgttcttagtagtgctttacttactccaaattactgctttgttttcaccaaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggttgttcttagtagtgctttacttactccaaattactgctttgttttcaccaaatac 320

                                                                       
Query: 121 acacattcacgtgtgcatatacatgctgttttctaattaaactactctgctgatctcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacattcacgtgtgcatatacatgctgttttctaattaaactactctgctgatctcctt 380

                                                                       
Query: 181 gccatattgaaatggctgtcaggtaaaatcacatctatttatttatttattcatgtgcgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gccatattgaaatggctgtcaggtaaaatcacatctatttatttatttattcatgtgcat 440

                                                                       
Query: 241 gcacatgtgtgtgtgtgctatgttgtgctcatgtggaggctagaggggagttagtgataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacatgtgtgtgtgtgctatgttgtgctcatgtggaggctagaggggagttagtgataa 500

                                                                       
Query: 301 ttgcatctctcctaccatgtgggtcccagggatgaaactccccacccgccttgaccaact 360
           ||| ||||||||||||||||||||||||||||||||||||   |  ||||||||||||||
Sbjct: 501 ttggatctctcctaccatgtgggtcccagggatgaaactcaggaagcgccttgaccaact 560

                                                                   
Query: 361 gatacatccccctagtccttcttaccaattttgaatccatttaatgaacatgaaga 416
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatacatctccctagtccttcttaccaattttgaatccatttaatgaacatgaaga 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)