BAC Information

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BAC

Clone NameMSMg01-205L01
Chromosome12 (Build37)
Map Location 30,709,855 - 30,861,715
singlet/doubletdoublet
Overlap geneTpo, Sntg2
Upstream gene4833405L11Rik, LOC629608, Myt1l, LOC100043496, Pxdn
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205L01.T7 (MSMg01no205_l01.b1)MSMg01-205L01.TJ (MSMg01no205_l01.g1)
ACCAG389588AG389589
length706710
length of high quality
(start - end)
661 (46 - 706)278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no205_l01.b1 PHD_FILE: MSMg01no205_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:37 2005CHROMAT_FILE: MSMg01no205_l01.g1 PHD_FILE: MSMg01no205_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,709,855 - 30,710,511)(30,861,438 - 30,861,715)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCACTCTCCAGAAAGGTCCACCAGGATGATGGTAAAGCAAGAGG
ACAGCATGGTAACTTGGTCGCTACCGGAATGGGCACAACCACAATGTGGA
TGATCATTCTGAGCGCATGAAGAGACTGCTGGTGGAGACTCTGTCCTTCA
GGGTTGTAGAAATCAAAGTAGAATGATATGTATTTCGGCAAGTATCCAAC
ACTGCTTTTCTCCTCCCAGGGACCTCTATTTGTGTTGAATATGGAAAGTA
ATCCATCCCCACTGTCCAGTGGCAAAGCTTCTTTGTGAATCCAGAATAGA
ACCCTATTGCTTCAAAGCAGACCCAGAGAGGTTGCATATCCTATAGTAAG
CACTAGAGTAGCTGCCCAAAAGTAACTCCCCCAGTTATAAAAATGCTAAC
ACACGTCTTGTAATGAAATAATAAGAGTAGCTAAGTAATGAGCTGTTAGA
TGGTGAGTGTTCAACCTGCCTGGATATGAGGGTCTCAGTCTCAATTTCAA
TCTCTCTAAGCTAGGAAGGAGCAGTATGTACATTCACAGAAAGTTCCTTT
GGTCACCCTTGGTCATAAGAGACGGGGGAAGAGGAACCAATAAATTCATA
AAATGGCCTTTTTCAATCCAGCTAAATTGGTGGTGGTTCTATTATATGTT
AATGAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTCCCCTTTCCTGGGTCACC
CTCCCCTGGCACTCTGGTTGGTTCCGGATCCTGAGCACCAGTACAGGAGC
AGTTTCTGAAAGGAATGGACCAGAGACTAAGAGAGGAATGTGGGTGGGGC
CTTCTGTAAAGGAAGGTAGAAGCTAGTCTTGCAGTATGAGATCCTTCTCT
TAGGAAGAGAAGCACCTTAGTTAAAACATCAGAGGTCCAGGAGAGCTTCG
GCACCTGTGATGAGCTGCCATCTCTCCTGTAGGCAGGTGTGCTGACTTCC
CATCTCTTGTACTACCACCGCCCCCATGGACAAGCAGGCTGTCCTCCTGA
AAAGGATGAAGCTCCCTCTGTGGACTTGTCTCAGCAATTTAGAATGTGAT
AGAATTTGGCTCAGATTTAATAAATAGGAAGTCAATGACTGAACAGTCGC
CTTAAAAGGAATTATACTATTCTTTGCCGTCTTAGAACATCACCATATTG
GAACAGCATCGAGTAGAAAGGGATCATCAGTGATGTACTGAAATCACCCT
TTCTGCCTGTTGAGCTGTCTGTTGGGCTGCGGATTGGGCTGCGGGTTGGG
CTGGATTTGTATCCCAAGACACTGAGATTGCTTTTCTCTACAACAGCATG
ACGTTTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_l01.b1 MSMg01no205_l01.b1 CHROMAT_FILE:
MSMg01no205_l01.b1 PHD_FILE: MSMg01no205_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:37 2005
         (661 letters)



>mm_chr12_30709651_30710711
          Length = 1061

 Score = 1224 bits (633), Expect = 0.0
 Identities = 651/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccactctccagaaaggtccaccaggatgatggtaaagcaagaggacagcatgg 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccactcagcagaaaggtccaccaggatgatggtaaagcaagaggacagcatgg 264

                                                                       
Query: 65  taacttggtcgctaccggaatgggcacaaccacaatgtggatgatcattctgagcgcatg 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taacttggtcgttaccggaatgggcacaaccacaatgtggatgatcattctgagcgcatg 324

                                                                       
Query: 125 aagagactgctggtggagactctgtccttcagggttgtagaaatcaaagtagaatgatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagagactgctggtggagactctgtccttcagggttgtagaaatcaaagtagaatgatat 384

                                                                       
Query: 185 gtatttcggcaagtatccaacactgcttttctcctcccagggacctctatttgtgttgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatttcggcaagtatccaacactgcttttctcctcccagggacctctatttgtgttgaa 444

                                                                       
Query: 245 tatggaaagtaatccatccccactgtccagtggcaaagcttctttgtgaatccagaatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatggaaagtaatccatccccactgtccagtggcaaagcttctttgtgaatccagaatag 504

                                                                       
Query: 305 aaccctattgcttcaaagcagacccagagaggttgcatatcctatagtaagcactagagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaccctattgcttcaaagcagacccagagaggttgcatatcctatagtaagcactagagt 564

                                                                       
Query: 365 agctgcccaaaagtaactcccccagttataaaaatgctaacacacgtcttgtaatgaaat 424
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agctgttgaaaagtaactcccccagttataaaaatgctaacacacgtcttgtaatgaaat 624

                                                                       
Query: 425 aataagagtagctaagtaatgagctgttagatggtgagtgttcaacctgcctggatatga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aataagagtagctaagtaatgagctgttagatggtgagtgttcaacctgcctggatatga 684

                                                                       
Query: 485 gggtctcagtctcaatttcaatctctctaagctaggaaggagcagtatgtacattcacag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggtctcagtctcaatttcaatctctctaagctaggaaggagcagtatgtacattcacag 744

                                                                       
Query: 545 aaagttcctttggtcacccttggtcataagagacgggggaagaggaaccaataaattcat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaagttcctttggtcacccttggtcataagagacgggggaagaggaaccaataaattcat 804

                                                                    
Query: 605 aaaatggcctttttcaatccagctaaattggtggtggttctattatatgttaatgat 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaaatggcctttttcaatccagctaaattggtggtggttctattatatgttaatgat 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no205_l01.g1 MSMg01no205_l01.g1 CHROMAT_FILE:
MSMg01no205_l01.g1 PHD_FILE: MSMg01no205_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:37 2005
         (278 letters)



>mm_chr12_30861238_30861915
          Length = 678

 Score =  538 bits (278), Expect = e-157
 Identities = 278/278 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgtcccctttcctgggtcaccctcccctggcactctggttggttccggatcctgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcctgtcccctttcctgggtcaccctcccctggcactctggttggttccggatcctgagc 419

                                                                       
Query: 61  accagtacaggagcagtttctgaaaggaatggaccagagactaagagaggaatgtgggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 accagtacaggagcagtttctgaaaggaatggaccagagactaagagaggaatgtgggtg 359

                                                                       
Query: 121 gggccttctgtaaaggaaggtagaagctagtcttgcagtatgagatccttctcttaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gggccttctgtaaaggaaggtagaagctagtcttgcagtatgagatccttctcttaggaa 299

                                                                       
Query: 181 gagaagcaccttagttaaaacatcagaggtccaggagagcttcggcacctgtgatgagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gagaagcaccttagttaaaacatcagaggtccaggagagcttcggcacctgtgatgagct 239

                                                 
Query: 241 gccatctctcctgtaggcaggtgtgctgacttcccatc 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gccatctctcctgtaggcaggtgtgctgacttcccatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)