BAC Information

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BAC

Clone NameMSMg01-205M01
Chromosome12 (Build37)
Map Location 31,100,085 - 31,100,370
singlet/doubletsinglet
Overlap genenone
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205M01.T7 (MSMg01no205_m01.b1)MSMg01-205M01.TJ (MSMg01no205_m01.g1)
ACCAG389629AG389630
length741719
length of high quality
(start - end)
293 (46 - 338)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no205_m01.b1 PHD_FILE: MSMg01no205_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:41 2005CHROMAT_FILE: MSMg01no205_m01.g1 PHD_FILE: MSMg01no205_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAAAGCACACTTTAAAATCTTTGATACAATAAAATGTTTTTGAA
AGGCAATTAAATTAATATAATAGCTTTAATTGTTTTTATATTAATTTTTT
TATTTGAACCATGTGCATTTGTCTAAAAATACCCTTTCTGTGAAAGCTGT
CCCTAATAGCATCTTCAGATAAAAATTTAAAAGAATCATAATGAATGCTT
CTTATTCAAATCTAAAATGAAAATTGATGTCTGGGATATTGTAGTATCTT
TTTTCTAAAGAACCTATATTTAGAGACATAGCTGTCTTATAAGATGCAAN
TAATTATTTGTTTGATTCACAGTACACATTATTTTGAAATTCATAATTTT
TAAGAAATATGGACTCACCCACGNCANNNNATTTATCTTTGTTAAGTATC
TATTCTTACACAAAATGGAGACGCTCCATTTAAAAACTAAAAAGTGTGTT
AAAAGTATAAAAACANNNNNNAATTATTGNCCCTTTAAAATAATNNNCGC
TGGTTAATAATCCCGTAAATCCCGTAATTCCTGTTGAAATGCACCCCGTT
AAACAATGAAGAAAGGCAAACTTTGGTTGNNNTGTTCCCCCGNTTTTAAA
AAACCCGGGGAAAAACCCCGAGNNNNNNNNNNNNAAAANTTCCCCCTCTT
TCTTACAGNNNNNNCCTCGCNGGGGGGGGGGGGGGGGGGGG
TCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCTCACTACTTTACTTGGGTTCCAG
GAATCAAGCTCAGGTTTTCAACCCGGTGTTAGGTAATTTTTGTGTGTGTT
GTTTTAATTCTTTCATATATTGCATCCCAACTGTAGTTTCCCCTCCATCC
TCTCCTCCCAAACCCACCCCAACCCCAGCCCAATCCACTCCTCCTCCATG
TCCTTCAGGAAAGGGCAGGCCTTCCAGGGATATCAACCAAACCTAATGAG
CCACCTCACTGGCTCACTCATTTTTTATATTTAAATTACTTAAATTTAAA
TAATTATTATTTAAATTTAAAATTATATAAATTTAAATAATTTAATAATT
TAAAATTATTTAAAGACAAAATTTCATAGCAATAAATCTCTACATTAAAA
GGAGAAAGACAATATAAGTGTCCTTAAATAATGCTCCAAGGATATAACAA
AACCTGAGGTTTATATAAAGAATAAAGAAGAGAACAAGTAAGTAAAATAG
AAATTATAAAATTCACAAGGAAAAAAATCAATAAATCTAAGAGTTGGTTT
TTTTTTCATTTTCTTTGANAATAAATAACCCTTTTGCTAGACTGAGAAGA
AAATGAGGGAGAGTCAAACCCTGAGTGAAAAGTACAGGTGTTTATTTTAG
CCGCACAGGTGAGAGCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_m01.b1 MSMg01no205_m01.b1 CHROMAT_FILE:
MSMg01no205_m01.b1 PHD_FILE: MSMg01no205_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:41 2005
         (293 letters)



>mm_chr12_31099775_31100466
          Length = 692

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaagcacactttaaaatctttgatacaataaaatgtttttgaaaggcaatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaattccaaaagcacactttaaaatctttgatacaataaaatgtttttgaaaggcaatta 537

                                                                       
Query: 65  aattaatataatagctttaattgtttttatattaatttttttatttgaaccatgtgcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aattaatataatagctttaattgtttttatattaatttttttatttgaaccatgtgcatt 477

                                                                       
Query: 125 tgtctaaaaataccctttctgtgaaagctgtccctaatagcatcttcagataaaaattta 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgtctaaaaata-cctttctgtgaaagctgtccctaatagcatcttcagataaaaattta 418

                                                                       
Query: 185 aaagaatcataatgaatgcttcttattcaaatctaaaatgaaaattgatgtctgggatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaagaatcataatgaatgcttcttattcaaatctaaaatgaaaattgatgtctgggatat 358

                                                          
Query: 245 tgtagtatcttttttctaaagaacctatatttagagacatagctgtc 291
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgtagtatcttttttctaaagaacctatatttagagacatagctgtc 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)