BAC Information

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BAC

Clone NameMSMg01-206E21
Chromosome12 (Build37)
Map Location 61,909,236 - 61,909,774
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206E21.T7 (MSMg01no206_e21.b1)MSMg01-206E21.TJ (MSMg01no206_e21.g1)
ACCAG389970AG389971
length739742
length of high quality
(start - end)
695 (45 - 739)667 (76 - 742)
definitionCHROMAT_FILE: MSMg01no206_e21.b1 PHD_FILE: MSMg01no206_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:26 2005CHROMAT_FILE: MSMg01no206_e21.g1 PHD_FILE: MSMg01no206_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATGACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATCGCAAATCAAAACAACCCTGAGATT
CTACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACACAG
ATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTTGTGGG
ATTCCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGGGCAT
ATTTCCAGAAAATGCCCCAACTGGTAAGAAGGACACATGCTCCAATATGT
TCATAGCAGCCTTATTTACAACAGCCAGAAGCTGGAAAGTACCCAGATGC
CCCTCAACAGAGGAATGGATTCAGAAAATGTGGTACAGCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAC
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGCACTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATTCCCAAGATATAAGGTACAATTTGCTAAACACATGAAACTCAAGAA
AAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCTGATTTGTCTACTCTTCAA
TTAGATGTCACTTTCAAACATGGCTCCTTCCCTCTAAAACTAACCTTTCC
TTCCTGTTAGTTATTAAAAGTATGTAATCTATTCCACAAACACCATACTA
TAATCTAGGAGATGTCTGCTTTATGGCTGAATCATGTTTAGATATAATCC
TTTTCCAGAGGAATCATGTTGCTGGATTAAAATACGTCTACATTTAGGTA
GAACACTTGCGTAACATGACTGTGGTTCAGGGTTCTTTCCTTAATCTCCA
TAAACTTGTAAATCTTGGCATAAATATATTATTGCAGCTCTAAGAAGATA
GAAGAGACAGGATCACAAGCCCAAGGTCATCCTTGGCAACACACAGATTT
CAAGAGGAACCTAGCAACAGAGGCTTTCTCAAAAAAAAAATGGAAAGGAA
AACCACACACATTTAATTTTCTTTCAAATTTTTCAATGAAATGTACTTTC
CACCCTGGTAAAGTACAAGAAGATTGTATCTCTTTGATAGCAATATCAAA
GCCTAAGTAAGACACAATTATCACTAAACTGTAAACAAAGTTTAAATTTA
GTACCTAATTATAAATATTTAAAATATTTTCATATAAATAAAACATAAGC
CAATTAAATAGGATTTTTGCATTCAAGTAGATTCAGGACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_e21.g1 MSMg01no206_e21.g1 CHROMAT_FILE:
MSMg01no206_e21.g1 PHD_FILE: MSMg01no206_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:26 2005
         (667 letters)



>mm_chr12_61908708_61909774
          Length = 1067

 Score =  895 bits (463), Expect = 0.0
 Identities = 520/539 (96%)
 Strand = Plus / Minus

                                                                        
Query: 129  tctaggagatgtctgctttatggctgaatcatgtttagatataatccttttccagaggaa 188
            |||||||||||||||| || |||||||||| |||||||||||||||||||||||||| ||
Sbjct: 1067 tctaggagatgtctgccttctggctgaatcctgtttagatataatccttttccagagaaa 1008

                                                                        
Query: 189  tcatgttgctggattaaaatacgtctacatttaggtagaacacttgcgtaacatgactgt 248
            ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| || |||||
Sbjct: 1007 tcatgttgctgaattaaaatacctctacatctaggtagaacacttgcttaatatcactgt 948

                                                                        
Query: 249  ggttcagggttctttccttaatctccataaacttgtaaatcttggcataaatatattatt 308
            |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  ggtttagggttccttccttaatctccataaacttgtaaatcttggcataaatatattatt 888

                                                                        
Query: 309  gcagctctaagaagatagaagagacaggatcacaagcccaaggtcatccttggcaacaca 368
            |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 887  gcagctctgagaagatagaagagacaggatcacaagttcaaggtcatccttggcaacaca 828

                                                                        
Query: 369  cagatttcaagaggaacctagcaacagaggctttctcaaaaaaaaaatggaaaggaaaac 428
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  cagatttcaagacgaacctagcaacagaggctttctcaaaaaaaaaatggaaaggaaaac 768

                                                                        
Query: 429  cacacacatttaattttctttcaaatttttcaatgaaatgtactttccaccctggtaaag 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  cacacacatttaattttctttcaaatttttcaatgaaatgtactttccaccctggtaaag 708

                                                                        
Query: 489  tacaagaagattgtatctctttgatagcaatatcaaagcctaagtaagacacaattatca 548
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 707  tacaagaagattgtatctctttgatagcaacatcaaagcctaagtaagacacaattatca 648

                                                                        
Query: 549  ctaaactgtaaacaaagtttaaatttagtacctaattataaatatttaaaatattttcat 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  ctaaactgtaaacaaagtttaaatttagtacctaattataaatatttaaaatattttcat 588

                                                                       
Query: 609  ataaataaaacataagccaattaaataggatttttgcattcaagtagattcaggactga 667
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 587  ataaataaaacataaaccaattaaataggatttttgcattcaagtagattcagggctga 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)