BAC Information

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BAC

Clone NameMSMg01-206L16
Chromosome12 (Build37)
Map Location 106,660,701 - 106,807,406
singlet/doubletdoublet
Overlap geneD430019H16Rik, Bdkrb2
Upstream geneGsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081
Downstream geneBdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206L16.T7 (MSMg01no206_l16.b1)MSMg01-206L16.TJ (MSMg01no206_l16.g1)
ACCAG390236AG390237
length731827
length of high quality
(start - end)
229 (134 - 362)234 (130 - 363)
definitionCHROMAT_FILE: MSMg01no206_l16.b1 PHD_FILE: MSMg01no206_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:59 2005CHROMAT_FILE: MSMg01no206_l16.g1 PHD_FILE: MSMg01no206_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,807,178 - 106,807,406)(106,660,701 - 106,660,933)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGTTTGCCCCCCCTGTGGTTTTGTAAGTGACATTTCTGAAGG
AATGAATTGTCCTCCGTTTTTCGCCTGACTGAGTCCCTTAAGTTTAATAA
GCGGTGCTATCATAGAGTCGGTCATTTCTCACACATATGTGATTTCACCA
CAATGCTTTGATGAATGAGTTTTAGGAACGGTTTCTAGAATTTTCAAGAT
TTTATATTGGATGTTAACATCCATAGTACAAGCTGTCGATATAGCCTGTC
AGAGGTTCATACACAAGGCGTCTATCAATATCAATATCAATCTCTACTTG
CTGAGATTTTCTGTTATTGCCTGCCAACACACAGCTGATGTCTGCAGCTG
TAGAAGCCATGTCATGCCCCCCACTTCTAATTACCTGCTAACGGTTGTCT
TTAAATTATGGACAGACATGAGAATCCATATCTGCTGATTAATGCCAGGA
TGCAGAGATGGCTTAACAGTAAAGTATTTGTCACACAACCGTGAAGACTT
GAGTTCAGATCCTCAACACCCAGGAAAGTCAGGCACAAAGGTACACAAAG
GCCCTCTGTATAATCTCAGAGGTCGTATGTCTGCAAGTCGCTGAAATGGG
GAACCTCAGACTCAGTGAGACCCTGTCTCAGACGATAATGTGAAGAGCTA
CAGAGAAAGATACTCAGTGTTCACACATGCA
CCGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGCTCCACTTACGCGTCTGTC
ATCAGTGGGCTCCACATCTTTTTCCCAATGTAGCACGCTGCACCATCTGT
CATACCCACAGGGGCAGAACTGGGCCTGTATGGGGTCCATCTTGCCTTCT
GAGTTCCAGCCTGTCTGTATGTAGGTTGTAGGCTGACAAGTACTCAAGGA
TTCCTAGTTAACCGGCGTTCAGGATTCATTCACAGTTCCCATGATATGAG
TGAGTCTAGGGTTAACATCTTCCTTGGTTGGTTTTCTGTTAACAGGAGTG
AGCGTGGATAGGTTGTGTGTGTATGTGCCGCCCGTCGTTTCCTTCCCCAC
CTAATTATTTTTTTTTTTTTCCCCCCCCAAAAAAAAAATATTAATTCCCC
CGCTCGTTCTTCTCCTTTTTTTTTTTTCACCTCTCCCCTTTTTCTTCTTC
TACCTCTCCCCACTTCTTCCCTTTTTTTCTTTTATTTTTCTCCCCCCTAC
CCCCATCCCCATATTCCTTTATCTTTTTTTCCCCTCTATCCCCTCCCCTT
TATTTTTTCTTCCTTTACTCCCCCCTTTTCTATACTCTCTTCTCCCTCTC
CATATCTATACCCCTCCCCTTTTCACTCTTTTTCCTTTTTTTCTATATCC
CCTTCACCATACCACCATTCACTTTACTTTTTTCTTCATCTTTACTACTC
TCACATTTACCCTATCCCCTTTTTTCTACTGCACTCTCTCTTTTTTATTT
TCTTTCCCACGTCCCTCCATTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_l16.b1 MSMg01no206_l16.b1 CHROMAT_FILE:
MSMg01no206_l16.b1 PHD_FILE: MSMg01no206_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:59 2005
         (229 letters)



>mm_chr12_106806978_106807606
          Length = 629

 Score =  404 bits (209), Expect = e-117
 Identities = 224/229 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccttaagtttaataagcggtgctatcatagagtcggtcatttctcacacatatgtgat 60
           |||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct: 429 tcccttaagtttaataagtggtgctatcatagactctgtcatttctcacacatatgtgat 370

                                                                       
Query: 61  ttcaccacaatgctttgatgaatgagttttaggaacggtttctagaattttcaagatttt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttcaccacagtgctttgatgaatgagttttaggaacggtttctagaattttcaagatttt 310

                                                                       
Query: 121 atattggatgttaacatccatagtacaagctgtcgatatagcctgtcagaggttcataca 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 309 atattggatgttaacatccatagtacaggctgtcgatatagcctgtcagaggttcataca 250

                                                            
Query: 181 caaggcgtctatcaatatcaatatcaatctctacttgctgagattttct 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caaggcgtctatcaatatcaatatcaatctctacttgctgagattttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no206_l16.g1 MSMg01no206_l16.g1 CHROMAT_FILE:
MSMg01no206_l16.g1 PHD_FILE: MSMg01no206_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:00 2005
         (234 letters)



>mm_chr12_106660501_106661134
          Length = 634

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagcacgctgcaccatctgtcatacccacaggggcagaactgggcctgtatggggtcca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gtagcacgctgcaccatctgtcatacccacaggggcagaactgggcctttatggggtcca 260

                                                                       
Query: 61  tcttgccttctgagttccagcctgtctgtatgtaggttgtaggctgacaagtactcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgccttctgagttccagcctgtctgtatgtaggttgtaggctgacaagtactcaagg 320

                                                                       
Query: 121 attcctagttaaccggcgttcaggattcattcacagttcccatgatatgagtgagtctag 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcctagttaactggcgttcaggattcattcacagttcccatgatatgagtgagtctag 380

                                                                
Query: 181 ggttaacatcttccttggttggttttctgttaacaggagtgagcgtggatagg 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttaacatcttccttggttggttttctgttaacaggagtgagcgtggatagg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)