Query= MSMg01no206_m22.b1 MSMg01no206_m22.b1 CHROMAT_FILE:
MSMg01no206_m22.b1 PHD_FILE: MSMg01no206_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:06 2005
(507 letters)
>mm_chr12_82232381_82233286
Length = 906
Score = 820 bits (424), Expect = 0.0
Identities = 472/500 (94%), Gaps = 23/500 (4%)
Strand = Plus / Plus
Query: 5 gaatttatatctgattgccttcctgccagggctgtgtttctccggaccaggattctaact 64
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatttatatctgactgctttcctgccagggctgtgtttctccggaccaggattctaact 264
Query: 65 tcctaggctgttactaactagttgaaaattttacacaaataattcgtttataaaggactt 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctaggctgttactaa-tagttgaaaattttacacaaataattcgtttataaaggactt 323
Query: 125 gctaagagggtaactcagtgtcttacaattcttcctatataaaataaacctcctttctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctaagagggtaactcagtgtcttacaattcttcctatataaaataaacctcctttctct 383
Query: 185 gcctaaacattctcaaaggttgctgattctgggccttttgtttttcacaggctggtcaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcctaaacattctcaaaggttgctgattctgggccttttgtttttcacaggctggtcaga 443
Query: 245 gagcatgttgttctggctctcaccagtttggttctggccttttaaagtgagcaaatggtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagcatgttgttctggctctcaccagtttggttctggccttttaaagtgagcaaatggtt 503
Query: 305 tgtatataatataatataatataatataatataatataatataatataatataatataat 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tg-----aatataatataatataatataatataatataatataatataatataatataat 558
Query: 365 ataatataatacaacataaccaaatttttttt--ctttttagtgtgtatgtgtgcagcat 422
| || ||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 559 a-aa--------------accaagttttttttttctttttagtgtgtatgtgtgcagcat 603
Query: 423 gtatgcctgtttgcttggatgtgtgtgagtgcatgcatgctcctgtgtgtgtgtgtgtgt 482
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 604 gtatgcctgtttgcttggatgtgtgtgagtgcatgcatgcccctgtttgtgtgtgtgtgt 663
Query: 483 gtgtgtgtgtgtgtgtgtgt 502
||||||||||||||||||||
Sbjct: 664 gtgtgtgtgtgtgtgtgtgt 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space: 445312
Effective search space used: 445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_m22.g1 MSMg01no206_m22.g1 CHROMAT_FILE:
MSMg01no206_m22.g1 PHD_FILE: MSMg01no206_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:06 2005
(666 letters)
>mm_chr12_82301829_82302894
Length = 1066
Score = 1226 bits (634), Expect = 0.0
Identities = 659/668 (98%), Gaps = 2/668 (0%)
Strand = Plus / Minus
Query: 1 catgctgtttatcttcttctaagcatccaaaggcaaaccgcagtaaatattccttaattc 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 940 catgctgtttatcttcttctaagcatccaaaggcaaaccgcagtaactattcattaattc 881
Query: 61 gtttagtagacaaatgttgactgagctctcaagatgcctgatacggtgttgtgctggttg 120
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 880 gtttagtagactaatgttgactgagctctcaagatgcctggtacggtgttgtgctggttg 821
Query: 121 cagatctattatgtgagtcaaggcagacatgtttcctcctcagccctcagct--aaaaaa 178
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 820 cagatctattatgtgagtcaaggcagacatgtttcctcctcagcccttagctaaaaaaaa 761
Query: 179 aaatctagcaaaggagactagacccaactaattaaaatccatcttaataattcctatgaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aaatctagcaaaggagactagacccaactaattaaaatccatcttaataattcctatgaa 701
Query: 239 gtaaaggtgtcaaacaggaaaccttgagttaagctgagtcagggcagatcctatggaaac 298
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 700 gtaaaggtgtcaaacaggaaaccttgagttaagctgagtcagggcaggtcctatggaaac 641
Query: 299 catgcctgaatgacaaatactaagtagcaggtattaggccaggctccctacttaactcaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 catgcctgaatgacaaatactaagtagcaggtattaggccaggctccctacttaactcaa 581
Query: 359 tctgggtttctacggcatttgaactctgaccttttgctagcttcaagtatttgtactaaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tctgggtttctacggcatttgaactctgaccttttgctagcttcaagtatttgtactaaa 521
Query: 419 tctcaccaggcaaaggtctccagggtgaatctggggcatctgtcaccgtaacaaagaagg 478
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 520 tctcaccaggcaaaggtctccagggtgaatctggggcatccgtcaccgtaacaaagaagg 461
Query: 479 atacccttccagaggtcaattctaagtattaagttcttcagtgtggctatgacagaaatc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atacccttccagaggtcaattctaagtattaagttcttcagtgtggctatgacagaaatc 401
Query: 539 ccaagagaaaaacttaaagacggaagaatccattttattcacagttttggggtgtcagca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ccaagagaaaaacttaaagacggaagaatccattttattcacagttttggggtgtcagca 341
Query: 599 caacatgtcatggaaggatacgatggagaaaagcaattcatatcttgcttgacaagaaac 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caacatgtcatggaaggatacgatggagaaaagcaattcatatcttgcttgacaagaaac 281
Query: 659 aaagaatg 666
||||||||
Sbjct: 280 aaagaatg 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
