BAC Information

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BAC

Clone NameMSMg01-211A03
Chromosome12 (Build37)
Map Location 30,925,998 - 30,988,735
singlet/doubletdoublet
Overlap geneSntg2
Upstream geneLOC629608, Myt1l, LOC100043496, Pxdn, Tpo
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211A03.T7 (MSMg01no211_a03.b1)MSMg01-211A03.TJ (MSMg01no211_a03.g1)
ACCAG392907AG392908
length1,2411,248
length of high quality
(start - end)
419 (29 - 447)326 (72 - 397)
definitionCHROMAT_FILE: MSMg01no211_a03.b1 PHD_FILE: MSMg01no211_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:46 2005CHROMAT_FILE: MSMg01no211_a03.g1 PHD_FILE: MSMg01no211_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,925,998 - 30,926,402)(30,988,410 - 30,988,735)
sequence
NNCCGTCATTGGGGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
CCAGATGAAGGTGACGGCTCTTCATGTGAAAGGTGATTGGTATAGGACCT
GCAGGCTCCTCAAAGGTTCTGCAGTACCAAGAGTTGTCATTTCACTCTAG
GCTCTTGATATCCAGTGACAGGAAGAGGTGAATTCCAAAGTAAATGAAAC
ACATCCTTCTCACAGAACAATGCTCTTTCATTGGAGGAAAGTTGTTTGTA
TCCATCTGCAAACCCCACTATTCTCTGATGCAATCCAGATCCATGCTCTG
GACTTACCACTTTCCAGTGGCACAGTGGAACTCATTAACCCCTCTAGGAG
ACCCGATCTTCCCACCTTCTTTATCATGTGTGCTGATCTCTCCTTTGTTC
ACAGATATCTCAACAGACAGCAGAGCCCCATGGCCCCCACTGGATTGTTT
GTACGACCCCACGACAAGAACCAGGACACTCCTTGACATCTTTGAAGGGG
ACAACTGCCCAAGTATAGAATTTTAGGGATGCTTCAGAGTTCTGAGGGGC
TAATGAAATTCAATGTCAAAAACAGTAAATGTTTTTGTGGAAAACAAAAA
CCAACAGAAACTCAGTTTAACATCTCACCAGCAACAGATAAACTGAGAAA
ATGTTTATGTGTAAACTACGTGGAGGTATCTTAGTGGACAAAATTGTAAG
AAATTTATTCTCAAGCTGCAAACTTCAGTGGAAATATAATATTTTAATGT
GAGAAGATATAGAATTAATGCTATTTTTGTTTGAAGACATTTATGGATGT
GTTAATCCATACATAAAATAATAAAATAGCTAGCCTCTCTTTAAGATGCA
TAAAACATACATAAAACAAAATAGCTGATGGTTAATTTATAAAATATTGA
AAGTAATAGGTTATATTTAGAAGAGTTATTTTATCAGTGTAAAAATGCTG
AATAAAAGGCCTGATTAAAGAATGGACGAAATTTTATGTCTTTCTCAGCC
CAACCTGAACTGGAAATAACAATGTTCTCCTGGGGGGTTATGGGCTTCCC
TTTTAAAATTCCGAAGCCGGACCCCCGTGTAAAAAATTTCTCTAACCCCC
CCTTTATCGTTCATGAGAAAAAAATTCTGCCTTTATTTTTTCTCTGGCAA
ATATAACCTCTCTTTTTCTCCAAAACCTATAATCAACATTTTCCTGTTTC
CCCACGATAATTCATTAAAACCTATCTCTCTCGCTCACCCC
NNNCCTATCACGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCTGCCATGTACATTCAGAGAACAGGAA
CCACATGGCATGAGAGAGTAAGAAAACAAGATATTTTAAAATTAATTTAC
TGTGTAAGTAATGGTTTTGTTTTAATGATTAACAGGTGCCACATGAAATC
TCTTGAAAAGTGAAAGGGTAAAGTTTGTTTTGCACTTTAAAAACATGCAG
CTGCTGTATGGAGAGTACATGCAGACACAGCAGTAAGAACATCACATGCA
GGCTAAGGTTACCCAGGCAAATGATGCGCAGTGCTCTGCTGTGCTTGAGA
ACAAATGATCAGGGTCCAGATGCCCTTTGTAGATGCAGTGTTAGGCTGTT
TATAGGGAACCAGGGTAGCAGGAATACAGAGAGTGAGCACCCTGTGTTGA
TTTTTTTTCCCCCCCCCCGACAATTACTTTACTAAACTGACAAAAGGGGG
CCTGTGAAGTCAGGTGAAGGAAAGGGCAGGAAGTCAGTATCCCATGTCCA
TTGCATGAGCTGTCCAGAGGAGTATAATGCTTAGGTCCACAGGGCAACAG
CGGAGATGGACAATCAGATAAGGAAGGGTTTAACTTGAATTGATGGGACC
AAGGCAACTCTCTAAGGACACATGGATAGAGATGATGCTGAGAATGTGGC
TGAAAGAGAACACAGGTGTCGAGAAGGAAAGAATGCTGTGGACTCGGCTC
TGGCTCTCCCATCCTTTAGGAGGCTATCTTTCTCATCTCCTCTGCATGGA
ACATGAATCCTAGAGGCAAACTACTGAGTGTGTAGCACAATTGCAGATCC
TGATTATACCTTACATGAATGTCATAAGGTCGAAGAATTTACACCACCTT
CCTAAAACCTACCCTAGGGTTCAAATGAGGCCCAACCCAGCCCCCACTAT
GATCTCAAAAGCCTGGAGAACTTACAGGTCTGTACATCTTGTGGCTAGGG
GAACCAAATGAACCTGAAAACTGTCCCCAGAACAAAATGCTACTCTTAAA
AACTTCTTTTCCCCCAATCCCCAAAAAAAATAATGGGGGGGATTTTTGTA
ACCCCTGGAGCGGAAAAATTTTCCTTCCCCCTTTTTTTTTTAAGGAGACC
CTTTACAAATATTTTAAAAACTTTTTATTTTCTCTTCACACCATAATTTC
TTTTTTTTTCCCCCCACAGCTCAAACAAATTTCTGCTCTGCCTTGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_a03.b1 MSMg01no211_a03.b1 CHROMAT_FILE:
MSMg01no211_a03.b1 PHD_FILE: MSMg01no211_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:46 2005
         (419 letters)



>mm_chr12_30925784_30926602
          Length = 819

 Score =  775 bits (401), Expect = 0.0
 Identities = 404/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattcaccagatgaaggtgacggctcttcatgtgaaaggtgattggtataggacctgc 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattcaccagatgaaggtgacggctcttcatgtgaaaggtgattggtataggacctgc 274

                                                                       
Query: 75  aggctcctcaaaggttctgcagtaccaagagttgtcatttcactctaggctcttgatatc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aggctcctcaaaggttctgcagtaccaagagttgtcatttcactctaggctcttgatatc 334

                                                                       
Query: 135 cagtgacaggaagaggtgaattccaaagtaaatgaaacacatccttctcacagaacaatg 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cagtgacaggaagaggtgaattccaaagtaaatgaaacacatccttctcacagaacaatg 394

                                                                       
Query: 195 ctctttcattggaggaaagttgtttgtatccatctgcaaaccccactattctctgatgca 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctctttcattggaggaaagttgtttgtatccatctgcaaaccccactattctctgatgca 454

                                                                       
Query: 255 atccagatccatgctctggacttaccactttccagtggcacagtggaactcattaacccc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atccagatccatgctctggacttaccactttccagtggcacagtggaactcattaacccc 514

                                                                       
Query: 315 tctaggagacccgatcttcccaccttctttatcatgtgtgctgatctctcctttgttcac 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 515 tctaggagacccgatcttcccaccttctttatcatgtgtgctgatctctcctttggtcac 574

                                                        
Query: 375 agatatctcaacagacagcagagccccatggcccccactggattg 419
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agatatctcaacagacagcagagccccatggcccccactggattg 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no211_a03.g1 MSMg01no211_a03.g1 CHROMAT_FILE:
MSMg01no211_a03.g1 PHD_FILE: MSMg01no211_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:46 2005
         (326 letters)



>mm_chr12_30988210_30988935
          Length = 726

 Score =  623 bits (322), Expect = 0.0
 Identities = 325/326 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgccatgtacattcagagaacaggaaccacatggcatgagagagtaagaaaacaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acctgccatgtacattcagagaacaggaaccacatggcatgagagagtaagaaaacaaga 467

                                                                       
Query: 61  tattttaaaattaatttactgtgtaagtaatggttttgttttaatgattaacaggtgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 466 tattttaaaattaatttactgtgtaagtaatggttttgttttaatgattaagaggtgcca 407

                                                                       
Query: 121 catgaaatctcttgaaaagtgaaagggtaaagtttgttttgcactttaaaaacatgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 catgaaatctcttgaaaagtgaaagggtaaagtttgttttgcactttaaaaacatgcagc 347

                                                                       
Query: 181 tgctgtatggagagtacatgcagacacagcagtaagaacatcacatgcaggctaaggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgctgtatggagagtacatgcagacacagcagtaagaacatcacatgcaggctaaggtta 287

                                                                       
Query: 241 cccaggcaaatgatgcgcagtgctctgctgtgcttgagaacaaatgatcagggtccagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cccaggcaaatgatgcgcagtgctctgctgtgcttgagaacaaatgatcagggtccagat 227

                                     
Query: 301 gccctttgtagatgcagtgttaggct 326
           ||||||||||||||||||||||||||
Sbjct: 226 gccctttgtagatgcagtgttaggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)