BAC Information

Click to search

BAC

Clone NameMSMg01-211I15
Chromosome12 (Build37)
Map Location 78,044,909 - 78,045,229
singlet/doubletsinglet
Overlap geneMax
Upstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb
Downstream geneLOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211I15.T7 (MSMg01no211_i15.b1)MSMg01-211I15.TJ (MSMg01no211_i15.g1)
ACCAG393217AG393218
length1,3201,301
length of high quality
(start - end)
63 (26 - 88)329 (129 - 457)
definitionCHROMAT_FILE: MSMg01no211_i15.b1 PHD_FILE: MSMg01no211_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:47 2005CHROMAT_FILE: MSMg01no211_i15.g1 PHD_FILE: MSMg01no211_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTATATGGGCGTATAGACTACTAAGGGAGAGGATCCGCGGAATTAAGG
CCAGCCTCTTCTACTTAGTGAGATTGGGGGCCCGGGAGGGGAGAGGCGGA
GGGTGGGGGTGTACCCCCCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGTTATTAAGTCTTCCACCACCCGTATTATAACAGATTTTGGA
TAGTGCGCTCTCCCCCTTCCTCTCATCACTTTAACGCCGTGTTTTTTTTT
TCACCTACCGAGAGTAGCTCTATTGTCTGTGAAAAAAAGGCTTATTTTTT
TTTTCCCCCCCCCCCGGAAAAAGCGTCTCCCCACAAAAAAGAAGGGGGGG
GGTCCTTCTTTGTAATTAACCTTCACAAATAAAGCGCACCTGAGTATCGT
GCCATTAAGTGTCCACTCCCCTATCCTAAAATCATTTGTATCAGCGTCGA
CACTCTTCTAATGTTGTCTGTCTCTCATTAGTTTATTGATTCACTTATGT
CTTCCTTACTGCCTGTCAAAATCCGGCGTATCATCACATAATAACCATTC
CCTCTATTTTTTATTTATTTTTTTTCTCTCTTTACCTACTTTTATCTAGA
TTTTTATTTTTTATCAAATATACTTACATTTATTTGTTCTTCTTTTTTTC
TTTGTTTTGTATTTCATTTTTTCTTTTTTTATTTCTCTTTACCCTTAATA
CTATTCTTATATTTCGTTCCATATATTCTTTATTTTTTTCTTATCTCATT
TTTAATAATACTCTTACTTCATATTCTTCTTTATCATCCTCTTATTCCTT
GATTTTACTTTATTTATGATCCTTCATATTTCCTCCACATTATTTCTGAA
TTTGCTTACTCTCTTCACTCTTTATTATAAAAAGCTAATCTTTTCTTTTA
TCATCTATTCATTCTTCTTATTTTTACCTTAACATTTACCTCTCTCTCAT
TCTATCTTCTTTCATACTTCTCTATGGATCCTTATCTCATTACATTAATA
GACTATAAATTTCTAATCGACACTAGTCATTTTATGTTTTTAGATATCCT
TTGTTTCCTCTTAATATAACTTATATTTCTGTTTTAATTCCTTACACTTC
TATCTTTCCTCTAATTATGCCTTTATATCTATCTTGTCACTATCATTTTA
TTACATCATATATCTCTTAA
NNCCCCAGCATGGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTAATTCTGAGTAGACATGCCTCTTCTGAA
CAGGCAGGACAGAGTAGTGGGCCAGGACAAATTGTGGCCGCAGGGACTAA
GAAGGTTAGCTACTCTATACATACATGTAGCAGCATGGAGAGCCAAGGTA
GATGCTGAGCAGCCTTACCAGTTCTTGCAAACCCATGTTTACACACAGGA
CTAAGAACAGCCAGTGAACAGAAACAGCGAGCGGCAGCTCACAGTCTGGG
GAACTGATGCACAAAGCTCTGTCTTAACAGACGTTAGTTACCTTGTAGGC
AATAGTCAGAATTTGACCTAAGTCTCAGGTACTCTCTTATTTTAGGATTT
GAGGCAGTTGTAGCACTAGTTTTAAAAGGTCAAGAGAACTTTTTCATATT
TTTTTTCCCCCCCCCCGAGAAAAACCAACGATGACGACAAAAAAGGGGGA
GAACCACTGATCTGCCTCAAGGATAACTCCAGTGAAGGTGGTTTCCTCAA
AGTAGAGTCAGGGCCCAATGGTGAGCCACTTCCACACAGGCACAGGCCTG
GGCAGAAAAGCAATGGCTGAAGACCAGTCTTTTTGGTTAAAAAGTGACAC
ACAAAATCCATCACACAAACAGTAACAACCACCACCAGCTTGTAGTAGTA
ACAACATCAGAGAACACTTTTCCACAGGTGAGAACTAAACACGCTCCTAC
TAGAGAAGAAATGCTGGGTGATTCAGAACCCGAACAGCCAACTCCCATAG
CACTGCCTCGTAAGAAACCCAGAAAGGGGGAAAAATACCAGGTACAATGC
AGAGGACTCCGGGTTTGACAGCAGGGTGGCCCGAGGGGACGGTCATCACA
TCTAGGGCTATATGCCCCCCTCTAAAAGCAGCAACCTATTCATGTGTCTT
GGCAGAACCTTTTCCTAAAGGACTTCAAGGCTTCCTAAAATGGTGAAGCT
TACTACAATCCATGCTTCCCTGGATTCTGAATGTTCTCTATCTTAAATTT
GGTCCCCCTTTATAAAGCTTCTCTTATGATCGTCCCTTGTCTTGTCATTT
TTTTTAATAAAAACCCTTTCTTAAATTGTTTCTCTTCCCGCAATCCCCTC
GTTTGCCTACCCATTTATGATTAATTTTCCCTCTCTCTTTCTTCTGTCTT
AATCTTTTTTCTCGTCTTTTATTAATTCACACAATGCTTCTCACTCAATT
ATACACATCTATCCCGTTACATATTTCCNCTTCTTTCCTCCTTTTGTACT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_i15.g1 MSMg01no211_i15.g1 CHROMAT_FILE:
MSMg01no211_i15.g1 PHD_FILE: MSMg01no211_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:47 2005
         (329 letters)



>mm_chr12_78044709_78045440
          Length = 732

 Score =  536 bits (277), Expect = e-157
 Identities = 309/321 (96%), Gaps = 3/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattgtggccgcagggactaagaaggttagctactctatacatacatgtagcagcatgg 60
           |||||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 201 aaattgtggctgcagggactaagaaggttagctattctatacatacacgcagcagcatgg 260

                                                                       
Query: 61  agagccaaggtagatgctgagcagccttaccagttctt---gcaaacccatgtttacaca 117
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 261 agagccaaggtagatgctgagcagccttaccagttcttcttgcaaacccatgtttacaca 320

                                                                       
Query: 118 caggactaagaacagccagtgaacagaaacagcgagcggcagctcacagtctggggaact 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggactaagaacagccagtgaacagaaacagcgagcggcagctcacagtctggggaact 380

                                                                       
Query: 178 gatgcacaaagctctgtcttaacagacgttagttaccttgtaggcaatagtcagaatttg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgcacaaagctctgtcttaacagacgttagttaccttgtaggcaatagtcagaatttg 440

                                                                       
Query: 238 acctaagtctcaggtactctcttattttaggatttgaggcagttgtagcactagttttaa 297
           ||||||||||||||||||||||| ||||||||   |||||||||||||||||| ||||||
Sbjct: 441 acctaagtctcaggtactctcttgttttaggaacagaggcagttgtagcactaattttaa 500

                                
Query: 298 aaggtcaagagaactttttca 318
           |||||||||||||||||||||
Sbjct: 501 aaggtcaagagaactttttca 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 732
Length adjustment: 9
Effective length of query: 320
Effective length of database: 723
Effective search space:   231360
Effective search space used:   231360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)