BAC Information

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BAC

Clone NameMSMg01-212C15
Chromosome12 (Build37)
Map Location 15,031,149 - 15,031,329
singlet/doubletsinglet
Overlap genenone
Upstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492
Downstream geneLOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212C15.T7 (MSMg01no212_c15.b1)MSMg01-212C15.TJ (MSMg01no212_c15.g1)
ACCAG393618AG393619
length716719
length of high quality
(start - end)
---186 (121 - 306)
definitionCHROMAT_FILE: MSMg01no212_c15.b1 PHD_FILE: MSMg01no212_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:51 2005CHROMAT_FILE: MSMg01no212_c15.g1 PHD_FILE: MSMg01no212_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATGCGA
TTATTTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACACGATGCTA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTCCCAGAAAATCTGTCTTCTAAGNTATTTACAAGCCATAGTGAAC
AGTGAGAGATATTACCTTTAAAAAACTCATTTTCTGGCCTTTCCTTATAA
GTACTTCTTTTGGAGTGAAGAAAAAAAGGAACAGTTTTACTTTCTTCGAT
CTCATTCTAGGGAACCATAGAAAACATGTCATAAAGGAACATAATTCAGG
AAGTCCACATTAGAAGGCATATAGCTCCCTATGACATGCACCATGGCTGC
TTCGTCAATATTTTTTTACTTTAGTTTTTAATATCACTTAAAATAAGTGT
GTTTTTTTTTCTCCCCCCCACCCCCTTTGTTTAAAACAAACATTTCCTTT
TCAATTTCACAACATAAAAAAACCACCTAGCAGAGCTTTGCAATATTATG
TACAATAATAATGGGTTGATGGCCTGAGAGATTGTTCAGAGCACTTGCTT
CTCTTCTAGGGGTTCTTAGTCTTATTCCCAGAATATCTGGCAGCTCATAA
CCATCTGGGACTGTAGATCCCAGGGATCCATTAACAGCTTCTGACCTCCA
TGAGAAACACACATACACACTCGCATATATATACGCACATGCGCACATTT
ACTCTCACCCGTGCATTCACACGCTCATATTGCCCTTTCTTACCTCTGGT
TTTCCAACCTCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_c15.g1 MSMg01no212_c15.g1 CHROMAT_FILE:
MSMg01no212_c15.g1 PHD_FILE: MSMg01no212_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:51 2005
         (186 letters)



>mm_chr12_15030947_15031532
          Length = 586

 Score =  319 bits (165), Expect = 6e-92
 Identities = 177/181 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaactcattttctggcctttccttataagtacttcttttggagtgaagaaaaaaaggaac 62
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 203 aaactcattttctggcctttccttgtaagtacttcttttggagtgaagaaaaaaaggaac 262

                                                                       
Query: 63  agttttactttcttcgatctcattctagggaaccatagaaaacatgtcataaaggaacat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agttttactttcttcgatctcattctagggaaccatagaaaacatgtcataaaggaacat 322

                                                                       
Query: 123 aattcaggaagtccacattagaaggcatatagctccctatgacatgcaccatggctgctt 182
           || |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 323 aaatcaggaagtccacattagaaggcatatagctccctatgacatgcactatggctactt 382

            
Query: 183 c 183
           |
Sbjct: 383 c 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)