BAC Information

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BAC

Clone NameMSMg01-213L22
Chromosome12 (Build37)
Map Location 32,825,154 - 32,858,406
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
Downstream genePik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213L22.T7 (MSMg01no213_l22.b1)MSMg01-213L22.TJ (MSMg01no213_l22.g1)
ACCAG394637AG394638
length736738
length of high quality
(start - end)		306 (431 - 736)292 (66 - 357)
definitionCHROMAT_FILE: MSMg01no213_l22.b1 PHD_FILE: MSMg01no213_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:51 2005CHROMAT_FILE: MSMg01no213_l22.g1 PHD_FILE: MSMg01no213_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,825,154 - 32,825,459)(32,858,115 - 32,858,406)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTT
TGGTCCAAGGGCTGACAAGTCCTTTTCTCTGAAAGCTCACAGGCTCACTC
TTGTCTGTGTTCCAGGCCCGAGTGGATGCCGATGGCTGGATGTACCTTAC
CTAAACTCATAAAGCATGTATTCTAAAGATTTATTTCCATTTGTATTTAT
GTGTATGTGTGCCAAGTGGTGTGGGTGCCCGAGGAGGCCGGTAGAGGGCC
TTGGGTCCTCTGGAGCTGGAGTTGTTATAGGTGGTTGTGACCCTCTGGAC
CTGGGTGATGGGAACTGAATTCAGTCCTTTGGAAAAGTAGCAAGCACTCA
TCACCACTTATTCATCTCCCTCACGCCCCCAAGACGTGTAGTTTAAGAGA
TTAGATTGCAGTCACACTGTATAGGTCTCAGAGCTGGCAGCTTTCCTTGT
CTTACGTCTTGGCTTAACTTTACTCTTAGAGGGCAAACCTACTTTTTTTC
TTATGGGACATGTCACCACCATTTCCGTACACCAGCTGTGGGGCCAAAGG
ACACCTGGTCATTTTCAGTGAAGCTTCGTTTCCCCATCTTCTTCCCTCCA
GCCAGCTTCCTGTTTTGGGACTCTCATCTGTCTAGTGAGAAGGCAGATGC
TACCCCTCACCTTCTGGCTTATGTAATAGAGTTCTCCCTGGTTTCTGTGA
TAAGTCAGGGAAACTGCTGTCTACGTTGTAACTGGA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATAGCATGATTTGGAAGCTGTTAGTCCTATATTA
ATGACAATTGAATATAATCTTAAATTAAAAAATTAGAAAAAACATTTCTG
AAATCATCAGCAATTATGTTTAACAACGTGAAGAAAATAAAATGAGCTAG
GATTTCTTAATGATTCTGTAGACTTATTTCCATCTTTATCCAACCGAATA
ATTCTTGTGAGCACATTTGATTCTAGTCTTAGTGCTTGTTCACATGTTCT
CAAAGGCTCATTTAAGGACAGATGCCAGGGAACTCTAAAGCACAGCGTGG
CTAGCCCTACTGGAAGCTAACATGGCCTCCTGTGTTTTAATTACAAATGT
TAATTTAAATTGAAAAAAAAAAGAATTTGACATCTTGTGTATCTTTTAAT
GTTTAAACTTCCAAATGTTTCTGAAACTCATTTTGAAACTGAAACTTATT
TTAAGAAATCGTTATTGAATGCTCATTGCCTACGAGAAACTGCACAGTGT
GCCGAGGAATTGAGGACGCAACAAAATGGACTGAGTCCCAGTTCCTACTC
GGTGTTTGTGTGTGTGTGNNTNNNTNTNTNTNNTNNTNNNNNTNNNTTTT
NTTTTTTTTTTTTTTTNNTNNTTTTTTTTTNNNTTTTTTNTNTTNTNTTN
NTNNNNNNTNNTTTTTTNNNNTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_l22.b1 MSMg01no213_l22.b1 CHROMAT_FILE:
MSMg01no213_l22.b1 PHD_FILE: MSMg01no213_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:51 2005
         (306 letters)



>mm_chr12_32824954_32825659
          Length = 706

 Score =  538 bits (278), Expect = e-157
 Identities = 299/306 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagctggcagctttccttgtcttacgtcttggcttaactttactcttagagggcaaacct 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gagctggcagctttccttgtcttatgtcttggcttaactttactcttagagggcaaacct 260

                                                                       
Query: 61  actttttttcttatgggacatgtcaccaccatttccgtacaccagctgtggggccaaagg 120
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct: 261 actttttttcttatgggacatgtcaccaccatttccatacgccagctgtggggccaaggg 320

                                                                       
Query: 121 acacctggtcattttcagtgaagcttcgtttccccatcttcttccctccagccagcttcc 180
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 acacctggtcattctcagtgaagctttgtttccccatcttcttccctccagccagcttcc 380

                                                                       
Query: 181 tgttttgggactctcatctgtctagtgagaaggcagatgctacccctcaccttctggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttgggactctcatctgtctagtgagaaggcagatgctacccctcaccttctggctt 440

                                                                       
Query: 241 atgtaatagagttctccctggtttctgtgataagtcagggaaactgctgtctacgttgta 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 atgtaatagagttctccctggtttctgtgaaaagtcagggaaactgctgtctacgttgta 500

                 
Query: 301 actgga 306
           ||||||
Sbjct: 501 actgga 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no213_l22.g1 MSMg01no213_l22.g1 CHROMAT_FILE:
MSMg01no213_l22.g1 PHD_FILE: MSMg01no213_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:51 2005
         (292 letters)



>mm_chr12_32857915_32858606
          Length = 692

 Score =  518 bits (268), Expect = e-151
 Identities = 286/292 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagcatgatttggaagctgttagtcctatattaatgacaattgaatataatcttaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tatagcatgatttggaagctgttagtcctatattaatgacaattgaatataatcttaaat 433

                                                                       
Query: 61  taaaaaattagaaaaaacatttctgaaatcatcagcaattatgtttaacaacgtgaagaa 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaaaaaattagaaaaaacatttctgaaatcatcagcaattatgtttaacaacgtgaagaa 373

                                                                       
Query: 121 aataaaatgagctaggatttcttaatgattctgtagacttatttccatctttatccaacc 180
           |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| 
Sbjct: 372 aataaaatgagctaggatttcttaatgattgtgtaggcttatttccatctttatccaact 313

                                                                       
Query: 181 gaataattcttgtgagcacatttgattctagtcttagtgcttgttcacatgttctcaaag 240
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 312 gaataattcttctgagcacatttgattctagccttagtgcttgttcacatgttctcaaag 253

                                                               
Query: 241 gctcatttaaggacagatgccagggaactctaaagcacagcgtggctagccc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gctcatttaaggacagatgccagggaactctaaagcacagcgtggctagccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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