Query= MSMg01no214_a18.b1 MSMg01no214_a18.b1 CHROMAT_FILE:
MSMg01no214_a18.b1 PHD_FILE: MSMg01no214_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:15 2005
(311 letters)
>mm_chr12_76869188_76869898
Length = 711
Score = 569 bits (294), Expect = e-166
Identities = 303/306 (99%)
Strand = Plus / Minus
Query: 5 gaattcctatcacatctgtggtggtttgaatatgcttggcccactattaggaggtataac 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 679 gaattcctatcacatctgtggtggtttgaatatgcttggcccactattaggaggtatagc 620
Query: 65 cttgttggagtgggtgtggccttgttggaggaagtgtgtcactgtggaggtggtagaaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cttgttggagtgggtgtggccttgttggaggaagtgtgtcactgtggaggtggtagaaga 560
Query: 125 gaaaggactcttgcaaattgtcctctgatacatatatgtgctgcgccacatatgtccctc 184
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaaaggactcttgcaaactgccctctgatacatatatgtgctgcgccacatatgtccctc 500
Query: 185 tcatccacaattgcagacaacacaaacaataataaaaactatggcctaaagaaggctaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcatccacaattgcagacaacacaaacaataataaaaactatggcctaaagaaggctaaa 440
Query: 245 tatacattcaattacagaaatcgaaggaggtggtaggcgcgagtgtttgtaggtcttcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatacattcaattacagaaatcgaaggaggtggtaggcgcgagtgtttgtaggtcttcct 380
Query: 305 caccaa 310
||||||
Sbjct: 379 caccaa 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no214_a18.g1 MSMg01no214_a18.g1 CHROMAT_FILE:
MSMg01no214_a18.g1 PHD_FILE: MSMg01no214_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:15 2005
(286 letters)
>mm_chr12_76718477_76719162
Length = 686
Score = 487 bits (252), Expect = e-142
Identities = 275/286 (96%), Gaps = 6/286 (2%)
Strand = Plus / Plus
Query: 1 actatgtagcccaagttagtcttgaacttgcaactccctgactcagcctcccaagtgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 actatgtagcccaagttagtcttgaacttgcaactccctgactcagcctcccaagtgtga 266
Query: 61 ttgtgcccaactacagtccacttcctaaagtttttttttttttatcacaatgttagcttt 120
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 267 ttgtgcccaactacagtccacttcctaaag------ttttcttatcacaatgttagcttt 320
Query: 121 ctgagattgtaatgaatgtctaaagcagctcagttataaagagaaaaaggctattctgcc 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ctgagattgtaatgaatgtctaaagcagctctgttataaagagaaaaaggctattctgcc 380
Query: 181 ccacaagtttagaggtttcagtccatggtcaaggtggcactcctgtttggggactatgtg 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacaagtttagaggtttcaatccatggtcaaggtggcactcctgtttggggactatgtg 440
Query: 241 ttagtataaccatcacgacatggtggtttagaagaaaagagagtta 286
|||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttagtagaaccatcacgacatggtgatttagaagaaaagagagtta 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
