BAC Information

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BAC

Clone NameMSMg01-215F20
Chromosome12 (Build37)
Map Location 117,362,368 - 117,477,327
singlet/doubletdoublet
Overlap geneVipr2, LOC676058, Wdr60
Upstream geneIgh, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386
Downstream geneLOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215F20.T7 (MSMg01no215_f20.b1)MSMg01-215F20.TJ (MSMg01no215_f20.g1)
ACCAG395640AG395641
length727743
length of high quality
(start - end)		234 (120 - 353)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no215_f20.b1 PHD_FILE: MSMg01no215_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:00 2005CHROMAT_FILE: MSMg01no215_f20.g1 PHD_FILE: MSMg01no215_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,362,368 - 117,362,601)(117,477,040 - 117,477,327)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTACAGGATCCGCGGAATTCTCAGA
TTCTTTGCCTGCATAAAACAGATACTTTTGACTTGCTTTTTAAAGGAATA
TTTCTGAGTTCTGAGCCCAAGGTTGTGGCTCCTGAGGAGTTGCTTGTGGC
TCGACTCTGTTCCTAAAAGTATAGTCTTTTCCACTTTCAACTGTCTCTCC
CTGTGTTGCAATAAGCGAGTTTTTATTAACTTTCTGAAGCTGACGTTCAT
GGGCTTAGTGTCATTACTTTTGTATCTTTCTTATGGTTGTGAAATGTCTG
ACCTGTTACTCTCTTTGATCAGTTTCAGAAGTCCTTGGCTGGTGCCTCCT
GAAATATTGCTTCCCATTATTCTCTTCTCCTGGATCAGCATGCTCAGTGT
GTTCTGTGTTTTGGCTGTTCTCATATATTTTCTTACCATCCTTCCATCTT
TTCTATCTTTTCCATGTCTCTCCACTTTAATCTAGGTATGCTCTATGTCT
TAGTCAGGGTTTCTATTCCTGTACAAACATCATGACCAAGAAGCAAATTG
GGAAGGAAAGGGTTTATTCAACTTACACTTCCACATTGTTGTTCATCACC
AAAGGAAGTCAAGACAGGAGCTCACACAGGGTAGGAACTTGGAGGCAGGC
GCTCATGCAGAGGCCATGGAGGGATGTTACTTACTAGCTTGTTTCCCCTG
GCTTGCTCAGCTTGCTTTCTTATAGAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTTACAGACCTATAATAAAAC
AAACAGGAAATTTTCAGGCAGAAACACCTGATGCCAGATAAAAACATGGA
CTCCTAAAGGAGAGAATGACTAAAAAATAAAGTAAGTTTATGAACCAATA
GAAATCAGTACTGACTGATTAAATGACTGCAGTATCTTATGGAATTAGAC
ATTAGATAGAATAAATATCTTCTTTACTACTTAGCCCAAGACTTGGAGAA
GTAAATGGCACAATAAGTCATTGTCAGGTCCTTGCAGCTAGATAAGAGGT
TATATTATAGTAGATATTTATGTTATAGCACCACCCACACAAGAGGTTAT
ATTATAGTAGGGCAAGGGTCTATGCCCAAATGATAAAAAAAAAATTCTGG
GAGGGTTGAGAGAGTATTATAAGTGAATAAATAGTATCATTAAAACCCAA
GATCAATCCAATGTTACGCACGAAGAGAACAATCAAAAGAATAGAGGATG
TTATAAAAATGCATAATAGATGGTAAAGTTACCCACAGCTATGTCATAAT
GTCTCTAAATGTTTGTATCCTTTTACTTCCATTTACGATCCAGACCTTAA
AACTGGTAAATTAACTATATTTTTGGAAAGAATTTTTTCCCGTCTGACCC
CATAATGCCTTCAAACTTCATGGTGCGTTTTTTTAATCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_f20.b1 MSMg01no215_f20.b1 CHROMAT_FILE:
MSMg01no215_f20.b1 PHD_FILE: MSMg01no215_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:00 2005
         (234 letters)



>mm_chr12_117362168_117362801
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttgtggctcctgaggagttgcttgtggctcgactctgttcctaaaagtatagtcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggttgtggctcctgaggagttgcttgtggctcgactctgttcctaaaagtatagtcttt 260

                                                                       
Query: 61  tccactttcaactgtctctccctgtgttgcaataagcgagtttttattaactttctgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccactttcaactgtctctccctgtgttgcaataagcgagtttttattaactttctgaag 320

                                                                       
Query: 121 ctgacgttcatgggcttagtgtcattacttttgtatctttcttatggttgtgaaatgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgacgttcatgggcttagtgtcattacttttgtatctttcttatggttgtgaaatgtct 380

                                                                 
Query: 181 gacctgttactctctttgatcagtttcagaagtccttggctggtgcctcctgaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacctgttactctctttgatcagtttcagaagtccttggctggtgcctcctgaa 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no215_f20.g1 MSMg01no215_f20.g1 CHROMAT_FILE:
MSMg01no215_f20.g1 PHD_FILE: MSMg01no215_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:00 2005
         (288 letters)



>mm_chr12_117476840_117477527
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcttacagacctataataaaacaaacaggaaattttcaggcagaaacacctgatgcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 488 tctgcttacagacctataataaaacaaacaggaaattttcaggcagaaacaattgatgcc 429

                                                                       
Query: 61  agataaaaacatggactcctaaaggagagaatgactaaaaaataaagtaagtttatgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agataaaaacatggactcctaaaggagagaatgactaaaaaataaagtaagtttatgaac 369

                                                                       
Query: 121 caatagaaatcagtactgactgattaaatgactgcagtatcttatggaattagacattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caatagaaatcagtactgactgattaaatgactgcagtatcttatggaattagacattag 309

                                                                       
Query: 181 atagaataaatatcttctttactacttagcccaagacttggagaagtaaatggcacaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atagaataaatatcttctttactacttagcccaagacttggagaagtaaatggcacaata 249

                                                           
Query: 241 agtcattgtcaggtccttgcagctagataagaggttatattatagtag 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agtcattgtcaggtccttgcagctagataagaggttatattatagtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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