BAC Information

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BAC

Clone NameMSMg01-216M01
Chromosome12 (Build37)
Map Location 30,925,998 - 30,988,735
singlet/doubletdoublet
Overlap geneSntg2
Upstream geneLOC629608, Myt1l, LOC100043496, Pxdn, Tpo
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216M01.T7 (MSMg01no216_m01.b1)MSMg01-216M01.TJ (MSMg01no216_m01.g1)
ACCAG396519AG396520
length750753
length of high quality
(start - end)		706 (45 - 750)595 (75 - 669)
definitionCHROMAT_FILE: MSMg01no216_m01.b1 PHD_FILE: MSMg01no216_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:53 2005CHROMAT_FILE: MSMg01no216_m01.g1 PHD_FILE: MSMg01no216_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,925,998 - 30,926,700)(30,988,141 - 30,988,735)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAGATGAAGGTGACGGCTCTTCATGTGAAAGGTGATTGGTATAG
GACCTGCAGGCTCCTCAAAGGTTCTGCAGTACCAAGAGTTGTCATTTCAC
TCTAGGCTCTTGATATCCAGTGACAGGAAGAGGTGAATTCCAAAGTAAAT
GAAACACATCCTTCTCACAGAACAATGCTCTTTCATTGGAGGAAAGTTGT
TTGTATCCATCTGCAAACCCCACTATTCTCTGATGCAATCCAGATCCATG
CTCTGGACTTACCACTTTCCAGTGGCACAGTGGAACTCATTAACCCCTCT
AGGAGACCCGATCTTCCCACCTTCTTTATCATGTGTGCTGATCTCTCCTT
TGGTCACAGATATCTCAACAGACAGCAGAGCCCCATGGCCCCCACTGGAT
TGGCTGGAGGAGCTGAGGACAAGAACCAGGACACTCCTTGCCATCTTTGA
AGGGGACAACTGCCCAAGTATAGAATTTTAGGGATGCTTCAGAGTTCTGA
GGGGCTAATGAAATTCAATGTCAAAAACAGTAAATGTTTTTGTGGAAAAC
AAAAACCAACAGAAACTCAGTTTAACATCTCACCAGCAACAGATAAACTG
AGAAAATGTTTATGTGTAAACTACGTGGAGGTATCTTAGTGGACAAAATT
GTAAGAAATTTATTCTCAAGCTGCAAACTTCAGTGGAAATATAATATTTT


CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCTGCCATGTACATTCAGAGAACAG
GAACCACATGGCATGAGAGAGTAAGAAAACAAGATATTTTAAAATTAATT
TACTGTGTAAGTAATGGTTTTGTTTTAATGATTAAGAGGTGCCACATGAA
ATCTCTTGAAAAGTGAAAGGGTAAAGTTTGTTTTGCACTTTAAAAACATG
CAGCTGCTGTATGGAGAGTACATGCAGACACAGCAGTAAGAACATCACAT
GCAGGCTAAGGTTACCCAGGCAAATGATGCGCAGTGCTCTGCTGTGCTTG
AGAACAAATGATCAGGGTCCAGATGCCCTTTGTAGATGCAGTGTTAGGCT
GCTGAGAGGGAACCAGGGTAGCAGGAATACAGAGAGTGAGCACCCTGTGC
TGACTCTGAAACAGGTGAGTGACAATTACTTTAATAAAGTGACTTAACTG
GCCCTGTGAAGTCAGGTGAAGGAAAGGGCAGGAAGTCAGTATCCCATGTC
CATTGCATGAGCTGTCCAGAGGAGTATAATGCTTAGGTCCACAGGGCAAC
AGCGGAGATGGACAATCAGATAAGGAAGGGTTTAACTTGAATTGATGGGA
CCAAGGCAACTCTCTAAGGACACATGNATAGAGATGATGCTGAGAATGTG
GCTGAAAGAGAACACAGGTGTCGAGAAGGAAAGAATGCTGTGGACTCGGC
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_m01.b1 MSMg01no216_m01.b1 CHROMAT_FILE:
MSMg01no216_m01.b1 PHD_FILE: MSMg01no216_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:53 2005
         (706 letters)



>mm_chr12_30925795_30926900
          Length = 1106

 Score = 1359 bits (703), Expect = 0.0
 Identities = 703/703 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccagatgaaggtgacggctcttcatgtgaaaggtgattggtataggacctgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccagatgaaggtgacggctcttcatgtgaaaggtgattggtataggacctgc 263

                                                                       
Query: 64  aggctcctcaaaggttctgcagtaccaagagttgtcatttcactctaggctcttgatatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggctcctcaaaggttctgcagtaccaagagttgtcatttcactctaggctcttgatatc 323

                                                                       
Query: 124 cagtgacaggaagaggtgaattccaaagtaaatgaaacacatccttctcacagaacaatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtgacaggaagaggtgaattccaaagtaaatgaaacacatccttctcacagaacaatg 383

                                                                       
Query: 184 ctctttcattggaggaaagttgtttgtatccatctgcaaaccccactattctctgatgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctttcattggaggaaagttgtttgtatccatctgcaaaccccactattctctgatgca 443

                                                                       
Query: 244 atccagatccatgctctggacttaccactttccagtggcacagtggaactcattaacccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atccagatccatgctctggacttaccactttccagtggcacagtggaactcattaacccc 503

                                                                       
Query: 304 tctaggagacccgatcttcccaccttctttatcatgtgtgctgatctctcctttggtcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctaggagacccgatcttcccaccttctttatcatgtgtgctgatctctcctttggtcac 563

                                                                       
Query: 364 agatatctcaacagacagcagagccccatggcccccactggattggctggaggagctgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agatatctcaacagacagcagagccccatggcccccactggattggctggaggagctgag 623

                                                                       
Query: 424 gacaagaaccaggacactccttgccatctttgaaggggacaactgcccaagtatagaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gacaagaaccaggacactccttgccatctttgaaggggacaactgcccaagtatagaatt 683

                                                                       
Query: 484 ttagggatgcttcagagttctgaggggctaatgaaattcaatgtcaaaaacagtaaatgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttagggatgcttcagagttctgaggggctaatgaaattcaatgtcaaaaacagtaaatgt 743

                                                                       
Query: 544 ttttgtggaaaacaaaaaccaacagaaactcagtttaacatctcaccagcaacagataaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttgtggaaaacaaaaaccaacagaaactcagtttaacatctcaccagcaacagataaa 803

                                                                       
Query: 604 ctgagaaaatgtttatgtgtaaactacgtggaggtatcttagtggacaaaattgtaagaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctgagaaaatgtttatgtgtaaactacgtggaggtatcttagtggacaaaattgtaagaa 863

                                                      
Query: 664 atttattctcaagctgcaaacttcagtggaaatataatatttt 706
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 atttattctcaagctgcaaacttcagtggaaatataatatttt 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no216_m01.g1 MSMg01no216_m01.g1 CHROMAT_FILE:
MSMg01no216_m01.g1 PHD_FILE: MSMg01no216_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:53 2005
         (595 letters)



>mm_chr12_30987941_30988935
          Length = 995

 Score = 1151 bits (595), Expect = 0.0
 Identities = 595/595 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgccatgtacattcagagaacaggaaccacatggcatgagagagtaagaaaacaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 acctgccatgtacattcagagaacaggaaccacatggcatgagagagtaagaaaacaaga 736

                                                                       
Query: 61  tattttaaaattaatttactgtgtaagtaatggttttgttttaatgattaagaggtgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tattttaaaattaatttactgtgtaagtaatggttttgttttaatgattaagaggtgcca 676

                                                                       
Query: 121 catgaaatctcttgaaaagtgaaagggtaaagtttgttttgcactttaaaaacatgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 catgaaatctcttgaaaagtgaaagggtaaagtttgttttgcactttaaaaacatgcagc 616

                                                                       
Query: 181 tgctgtatggagagtacatgcagacacagcagtaagaacatcacatgcaggctaaggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgctgtatggagagtacatgcagacacagcagtaagaacatcacatgcaggctaaggtta 556

                                                                       
Query: 241 cccaggcaaatgatgcgcagtgctctgctgtgcttgagaacaaatgatcagggtccagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cccaggcaaatgatgcgcagtgctctgctgtgcttgagaacaaatgatcagggtccagat 496

                                                                       
Query: 301 gccctttgtagatgcagtgttaggctgctgagagggaaccagggtagcaggaatacagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gccctttgtagatgcagtgttaggctgctgagagggaaccagggtagcaggaatacagag 436

                                                                       
Query: 361 agtgagcaccctgtgctgactctgaaacaggtgagtgacaattactttaataaagtgact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agtgagcaccctgtgctgactctgaaacaggtgagtgacaattactttaataaagtgact 376

                                                                       
Query: 421 taactggccctgtgaagtcaggtgaaggaaagggcaggaagtcagtatcccatgtccatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taactggccctgtgaagtcaggtgaaggaaagggcaggaagtcagtatcccatgtccatt 316

                                                                       
Query: 481 gcatgagctgtccagaggagtataatgcttaggtccacagggcaacagcggagatggaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcatgagctgtccagaggagtataatgcttaggtccacagggcaacagcggagatggaca 256

                                                                  
Query: 541 atcagataaggaagggtttaacttgaattgatgggaccaaggcaactctctaagg 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atcagataaggaagggtttaacttgaattgatgggaccaaggcaactctctaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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