BAC Information

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BAC

Clone NameMSMg01-217J07
Chromosome12 (Build37)
Map Location 108,981,446 - 108,981,552
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
Downstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217J07.T7 (MSMg01no217_j07.b1)MSMg01-217J07.TJ (MSMg01no217_j07.g1)
ACCAG397061AG397062
length737716
length of high quality
(start - end)
111 (46 - 156)44 (127 - 170)
definitionCHROMAT_FILE: MSMg01no217_j07.b1 PHD_FILE: MSMg01no217_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:14 2005CHROMAT_FILE: MSMg01no217_j07.g1 PHD_FILE: MSMg01no217_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAATTTCAGTCTGGTCTCTAAACATCACGTATTTACATCTTCCGT
CTATTATGCTACTTCAAATAAGATCGCTATGAAATTGCCCCAACTTTGGG
CAACTGCAGATCATAACGTATGAAGATTATTGCATTACAGGAGAGAGGTC
GTATCTCATTTAAAACACGAAAGCACATAATTTCATAGATGTATATCTGT
AGCTGGATATATATCTATGAACAATGAAATTGCCCCAAAATTAAAAGCCT
CTGGCTATATATTTGCAAACACATTCTTATCACAATCCAATATAGGGTGG
CTTTTGAATTAATGTGTTCTTTCCCCCTATCGAGCCCTTACGTTTATAAC
TTTTCTCCTCAACAGTTCTCTGCCCAAAACAAATAAAAATCACGTAGTTC
GCGCATGTCTTCTCCGGTCTTCCCTTTGTCCATTGCCAAATTCACTCCTA
TTCCTCGCATAACATAACTGCGCCTCATCCGGTGTTTATATTCTATCCAG
GCTTCGTCCCCCTTCCCTCGTTCTTTTTGCAGGCGTATTTTTATCCTTAT
TTCCCACTTTTCTGTTACCCTACCCCATTCTTGTTTTAATGGATTATACC
TAATATACCCCCTCTATTTGTTTTTTGTCCCCCCCTTTATTTTGTTTTAT
CTTCCCCCCCCCTCTGTTTATCCATCCCTACGCCCGG
CGATGATAGCGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCCCAATTCTGGGGAAGGCCAATCCAAGTTACAGGG
GAGACTGCAATGGGCACCATCCCCCCCTGGGTGAGACTGACTGCAACAGG
CAATGGGGGCTTCTGGGAGTGGCAGGAATGTTTTCTGTCACGACTGTACC
ATTGGCTACAGGACTGAATACACTTCACAACATTTTCCAACTTGGTGCAC
TGAAAATTGGCGAATTTCACTGAATATACATCCCTGAAGGTGGCTGTCCA
CAAGAGCACCTGAAATGAACTTGTTACCTTTCTGGCCAAGCAGGATTTAC
TCTAGCCTGGTAGATTCATCCATCCGCCACCCTCCGTGTGACTTTAGTCT
CTGCAGAACTCATGCTACCCACGCCCTCGACTATGCTCCTGTAATACCCG
TACTGCCAGACCCACCCCTGCTTTTTCTGCTGCCCCATCCCTCAACATTA
TGATCCTCCGTGTTCGCTCACTGATTAGTGCCTTCTCTCTCTCCCAGCTC
ATTTCTTAGCCCTATGCTCTTTGTTGGACAGATTATTTCTCCTGCTCATG
CCTGCCATTGTTTATTGTCTATCAGCTCTGACCCTGCCCTAGGATGGTCC
CTTTGTGATTTCTGTTTCCCTATGACCTCTGCATCCTCCAGGGTGTTTTC
TCCGTACATATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_j07.b1 MSMg01no217_j07.b1 CHROMAT_FILE:
MSMg01no217_j07.b1 PHD_FILE: MSMg01no217_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:14 2005
         (111 letters)



>mm_chr12_108981242_108981752
          Length = 511

 Score =  184 bits (95), Expect = 2e-51
 Identities = 104/107 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatttcagtctggtctctaaacatcacgtatttacatcttccgtctattatgc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatttcagcctggtctctaaacatcacgtatttacatcttccgtctattatgc 264

                                                          
Query: 65  tacttcaaataagatcgctatgaaattgccccaactttgggcaactg 111
           ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 265 tacttcaaataagattgttatgaaattgccccaactttgggcaactg 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space:    51809
Effective search space used:    51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)