Query= MSMg01no218_o02.b1 MSMg01no218_o02.b1 CHROMAT_FILE:
MSMg01no218_o02.b1 PHD_FILE: MSMg01no218_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:01 2005
(328 letters)
>mm_chr12_34917144_34917871
Length = 728
Score = 580 bits (300), Expect = e-170
Identities = 318/324 (98%)
Strand = Plus / Minus
Query: 5 gaattcaatgcaagaagtaatcaaaatgaaaatcatcaacaggttttggtaccagatata 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 528 gaattcaatgcaagaagtaatcaaaatgaaaatcatcaacaggttttgataccagatata 469
Query: 65 acaatactgaaatttcactaaacttaccaaaaatgtttgtataaactgaatgataccaaa 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 468 acaatactgaaatttcactaaactaaccaaaaatgtttgtataaactgaatgataccaaa 409
Query: 125 aacaataacacagctgttgacagaatccgatggtaacagaaatccgattctgtgaccttt 184
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 408 aacaataacacagttgttgacagaatccgatggtaacagaaatccgattctgtgacattt 349
Query: 185 gttgactgttatcctgatttacccagtgtgatcttttatcagggcttggccatctctatt 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 348 gttgactgttatcctgatttacccagtgtgatcttttatcagggcttcgccatctctatt 289
Query: 245 cttgttttgtcacttccctagaagggcgtgctcatccttctttataaagttctgaaaaaa 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cttgttttgtcgcttccctagaagggcgtgctcatccttctttataaagttctgaaaaaa 229
Query: 305 gaaaccaacaaaattattttgccc 328
||||||||||||||||||||||||
Sbjct: 228 gaaaccaacaaaattattttgccc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_o02.g1 MSMg01no218_o02.g1 CHROMAT_FILE:
MSMg01no218_o02.g1 PHD_FILE: MSMg01no218_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:01 2005
(286 letters)
>mm_chr12_34825558_34826243
Length = 686
Score = 484 bits (250), Expect = e-141
Identities = 274/284 (96%), Gaps = 4/284 (1%)
Strand = Plus / Plus
Query: 1 cacttgtggtttgtatgttgtgctgtgctgaattttctttctggaattccctgattgcac 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cacttgtggtttgtatgttgtgctgtgctgaattttctttctggaattatctgattgcac 260
Query: 61 atcactctgctgtataataataaggactgtttcctacccttggtcagggatcttctcaaa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 atcactctgctgtataataataaggactgttttctacccttggtcagggatcttctcaaa 320
Query: 121 aggaagtgtcgtaatgacaccacaactggattttgctgtgtttttgtttgtttgtttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagtgtcgtaatgacaccacaactggattttgctgtgtttttgtttgtttgtttgtt 380
Query: 181 tgttttccaggctaggggagaaccagctccttgttaggcttcctctatctaatcacatca 240
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 t----tccaggctaggggagaaccagctccttgttaggcttcctctgtctaatcacatca 436
Query: 241 caaaagctattagggttcatattcccaaacaagagtgctaggtg 284
||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 437 caaaagctaagagggttcatattcccaaacaagagtgctaggtg 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
