BAC Information

Click to search

BAC

Clone NameMSMg01-231J09
Chromosome12 (Build37)
Map Location 104,149,970 - 104,150,258
singlet/doubletsinglet
Overlap genenone
Upstream geneTrip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c
Downstream gene9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231J09.T7 (MSMg01no231_j09.b1)MSMg01-231J09.TJ (MSMg01no231_j09.g1)
ACCAG398358AG398359
length697771
length of high quality
(start - end)
316 (36 - 351)289 (134 - 422)
definitionCHROMAT_FILE: MSMg01no231_j09.b1 PHD_FILE: MSMg01no231_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:55 2005CHROMAT_FILE: MSMg01no231_j09.g1 PHD_FILE: MSMg01no231_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGT
GGCCTGCCACACCTTCCTTGCTTCTAGGTAGGTTCTAATTTTAGATCTAA
ATTTAGGTGTGCCCCTAGAGAGATAGCTCACTAATTAAGAGCACTGACTG
CTCTTCCAAAGGACCTGTGTTCAATTCCAAGTACCCACATGGTGGCTCAC
AGCCATCTGTAGTTACAGTTCTAGGGGATCCAATAACTTCTTCTTTCATG
GGCACCAGGTGTGCATGTGGTACACAGACTATATATGCATACAACACAAT
CATACACACCAAAATATTAACAATTAAAAAAAACAAACCAACTTGGGTCT
TCTTGATTGCACCCCACACACTTTGAACACAAAGCTATCTCCAACATTCT
AGGCTTGGCTCCCCGACAGAGGGTGGCCCTAGCTGGCCTCAAATTTGCAG
CACTTCTCATTCTTTGCTTCTTGTGCACAGAGATTACTGATGTATCACTA
TGCCCAGCTTTTTTAAATTTTCATTTTCTAAGTGCTTAAGTTGAACCCAT
CTTTCTACCTCANATTCCACAGTGCTAGGATTACAAGTGTTTGCCACCAT
ATCTAACTCTATTATTAGAAATTCAGGCTATTTATATTTTTCACTATAGT
CAGGATGGTATCAGTGAATATATTAATAAATACGCTTTTAAGAGAAT
TCTCTCCTTTTTTCCTCTTTTTTTTTTTTTCTCTTTTTNCTCANCCGTCC
NNNNCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGATTGAGGTCAGCTT
GGTCTATAGAGTGAGTTCCAGAACAGTCAGCCCTACACAGAGAAACCCTA
CCTTGAAAAACCAAATGTGTGTGTATGTGTGTGTGTGTGTGATATTATTG
ACACAGTGGATCTATTTTAATTCTGAAAATCCCTGTGTTATTCATCACAA
AAGACAACAGAGACATTTCTCAAGTAATTGCTTTACATTTTACTCCTGAG
AATTGACTAAAACTAGATTTGTCTTTGACTCATGAACATTTATCTTATTC
TTTTCTTTCTATTGGTTGTTTGTTTACCGGCCTCGCCCCTGGTTCAGGCT
GGTGTCATATTCCTGGGCTCAACTGACCCCCTAACTTAAGGGTTCTTTGG
AAAGTCAGTTGTGTTGGAAGGTATTTTGCTGAGGCAAACACGTGAAGGAA
TGTTTTCCTGAAGTGGACACAGGTGAAAGACTAATGCATACTCGTGAAGA
ACGTTTCACTGATCCAAACACAGGAGAGAGGATATTCTGCTATAGCAAGT
TCCTGATATGACACATGATGAAAGATACTTTGCTATACATGTATTGGTCC
GCTCTTACATTGTGTAGCTGAGCTGCATTTGTCAGGTCTTCATAGAGAGA
TACGCATCACTAATCTTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_j09.g1 MSMg01no231_j09.g1 CHROMAT_FILE:
MSMg01no231_j09.g1 PHD_FILE: MSMg01no231_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:55 2005
         (289 letters)



>mm_chr12_104149662_104150350
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgattgaggtcagcttggtctatagagtgagttccagaacagtcagccctacacagaga 60
           ||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||
Sbjct: 597 atgattgaggtcagcttggtctatagagtgagttccagaacagccagggctacacagaga 538

                                                                       
Query: 61  aaccctaccttgaaaaaccaaatgtgtgtgtatgtgtgtgtgtgtgtgatattattgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaccctaccttgaaaaaccaaatgtgtgtgtatgtgtgtgtgtgtgtgatattattgaca 478

                                                                       
Query: 121 cagtggatctattttaattctgaaaatccctgtgttattcatcacaaaagacaacagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cagtggatctattttaattctgaaaatccctgtgttattcatcacaaaagacaacagaga 418

                                                                       
Query: 181 catttctcaagtaattgctttacattttactcctgagaattgactaaaactagatttgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 catttctcaagtaattgctttacattttactcctgagaattgactaaaactagatttgtc 358

                                                            
Query: 241 tttgactcatgaacatttatcttattcttttctttctattggttgtttg 289
           |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 357 tttgactcatgagcatttatcttattctttcctttctattggttgtttg 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)