BAC Information

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BAC

Clone NameMSMg01-232D14
Chromosome12 (Build37)
Map Location 12,098,692 - 12,247,142
singlet/doubletdoublet
Overlap genenone
Upstream geneKcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
Downstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449, Ddx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232D14.T7 (MSMg01no232_d14.b1)MSMg01-232D14.TJ (MSMg01no232_d14.g1)
ACCAG398799AG398800
length730730
length of high quality
(start - end)
314 (42 - 355)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no232_d14.b1 PHD_FILE: MSMg01no232_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:40 2005CHROMAT_FILE: MSMg01no232_d14.g1 PHD_FILE: MSMg01no232_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,098,692 - 12,099,000)(12,246,855 - 12,247,142)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCTTAATTGTGTGTTAGTTTTTCTCTCAAGGTGTTGAATTAAAGATAA
AACATAAACTGTCACAAAGAAGTATGTGCCACATACTATTTCTTTCGCCT
TTCAAATCTTGGGTCTGAAATATTTCAGTTTTAGTAATAAGGCAAAGTTT
TCAAACATGTTTTCTAAACTATTTTTTCCATCAAAAACTGTGGATATTAA
AAGATTATTAATCTTGAAAAGAAGTGTAAAGAGCTAAAGATTTCACACTT
GAAAGAGCTAAAGATTTCACACTTGAAAGTTGCCAGGCTATCTTGTTACA
GTTTGGGAATGTTATTTTAGCCCCGCCCCCACTGGGTCAGATACAAAATA
CAGCATATAACTCAGGAACCCCCAGAATCCAAGATGCCATTACTTTCTTT
TGATTTCATAGATTTCTTTGAAATCTCCTACTGGTGTTTGTTTACGTTTG
GTACTGTTGCATTATGTACATTTTGAGCCTAGGAAATGCCCACCCCTTCA
AATAATTTCTACATAAACTTAATTGACATTTGATCCACTATGAGATATAC
TTGATTCACCAACAAGATGAAAAATGTGGTTTAGAACAAACATTACCAGT
ATCATCATTTAAAAGATAAGCCAAAAAGCAGAGGGCCCATAGAGAATTAT
TGTTCAACAAGGTCTTCCTCTGTCCATTTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGTGCAAAATTTAAATAGGGTACAGAA
ACATGGTAAGACCAGAGGAGCAATATTAACGTGAAAAGTTATTTAAGGTA
AAAGAAGAGAGGGAAATAAAAATAAGGACTTGAGACAGCTTATTAAATAG
AAAATATATCTATAAAAATAAGTCTAGTCATAGCTGCAATGAATATAAGG
GAAACAGAGCTTCCTATGGAACAACCACTCCGTGCTACTTAGTGAAACAG
AACAGAACATAATTACATTTAAATTGAAAGTCTATGTGTATCAGGTAAGT
TACTGTAGCTTTTTTTCCACCCCCCCCACCTACTTTACATAAGAGGGAAC
CTGAAGAGAGAACCACCCAAAGAAAATATCAGAAAAATTATGACTTTAAA
GAGATATGGAATTCAAATATATCATAGATTTTTTTTAGACTTCTAACAAT
CTGACTGCAAAATATGTGGAGAAAAAAAATGACAGACGATAAGAGAAAGA
TGAATCTACATCCCTTAGGACATGTTAGTGTTTGTTTCTCTAAAATCAGC
AGGTTACACAATCAGGAGGGACCTGAGCTGAGCTTGCTGGTGCTTCCCAC
AGCAGTGGGCCACAGATGGGTCACAGGAGTGCTGAGATATTGATCCGTGT
GGTCATGGAGTGGCCTGTGGCGGCTTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_d14.b1 MSMg01no232_d14.b1 CHROMAT_FILE:
MSMg01no232_d14.b1 PHD_FILE: MSMg01no232_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:40 2005
         (314 letters)



>mm_chr12_12098488_12099201
          Length = 714

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcttaattgtgtgttagtttttctctcaaggtgttgaattaaagataaaacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcttaattgtgtgttagtttttctctcaaggtgttgaattaaagataaaacat 264

                                                                       
Query: 65  aaactgtcacaaagaagtatgtgccacatactatttctttcgcctttcaaatcttgggtc 124
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 265 aaactgtcacaaagaagtatgtgccccatactatttctttcccctttcaaatcttgggtc 324

                                                                       
Query: 125 tgaaatatttcagttttagtaataaggcaaagttttcaaacatgttttctaaactatttt 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaaatatttcagttttagtagtaaggcaaagttttcaaacatgttttctaaactatttt 384

                                                                       
Query: 185 ttccatcaaaaactgtggatattaaaagattattaatcttgaaaagaagtgtaaagagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttccatcaaaaactgtggatattaaaagattattaatcttgaaaagaagtgtaaagagct 444

                                                                       
Query: 245 aaagatttcacacttgaaagagctaaagatttcacacttgaaagttgccaggctatcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagatttcacacttgaaagagctaaagatttcacacttgaaagttgccaggctatcttg 504

                    
Query: 305 ttacagttt 313
           |||||||||
Sbjct: 505 ttacagttt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no232_d14.g1 MSMg01no232_d14.g1 CHROMAT_FILE:
MSMg01no232_d14.g1 PHD_FILE: MSMg01no232_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:40 2005
         (289 letters)



>mm_chr12_12246655_12247343
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgcaaaatttaaatagggtacagaaacatggtaagaccagaggagcaatattaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 actgtgcaaaatttaaatagggtacagaaacatggtaagaccagaggagaaatattaacg 429

                                                                       
Query: 61  tgaaaagttatttaaggtaaaagaagagagggaaataaaaataaggacttgagacagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaaaagttatttaaggtaaaagaagagagggaaataaaaataaggacttgagacagctt 369

                                                                       
Query: 121 attaaatagaaaatatatctataaaaataagtctagtcatagctgcaatgaatataaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attaaatagaaaatatatctataaaaataagtctagtcatagctgcaatgaatataaggg 309

                                                                       
Query: 181 aaacagagcttcctatggaacaaccactccgtgctacttagtgaaacagaacagaacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaacagagcttcctatggaacaaccactccgtgctacttagtgaaacagaacagaacata 249

                                                           
Query: 241 attacatttaaattgaaagtctatgtgtatcaggtaagttactgtagc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attacatttaaattgaaagtctatgtgtatcaggtaagttactgtagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)