Query= MSMg01no232_g04.b1 MSMg01no232_g04.b1 CHROMAT_FILE:
MSMg01no232_g04.b1 PHD_FILE: MSMg01no232_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:52 2005
(318 letters)
>mm_chr12_35521870_35522587
Length = 718
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%), Gaps = 1/312 (0%)
Strand = Plus / Plus
Query: 5 gaattctttaatgctggaacttagctcaggaagatctgacagtgtctccacacagcaaag 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttaatgctggaacttacctcaggaagatctgacagtgtctccacacagcaaag 265
Query: 65 tggtcctgtaaaaaaaacgtctcactagcggggtggtctagaagtcaattaacctctctg 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tggtcctgtaaaaaaa-cgtctcactagcggggtggtctagaagtcaattaacctctctg 324
Query: 125 agtttcacttgcttaaacatgaattacttaacttaccaggtcatgttgaggattagcgga 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 agtttcacttgcttaaacatgaattatttaacttaccaggtcatgttgaggattagcgga 384
Query: 185 aataataggaagtaacacgaaggggaacatactcaaaagattggctattattagcattag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataataggaagtaacacgaaggggaacatactcaaaagattggctattattagcattag 444
Query: 245 tatacaaattgtactttacttcaagccagagccattctaggagcaaagagtgacacaggg 304
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 tatacaaattgtactttacttcaagccagagccattctaagagcaaagagtgacacaggg 504
Query: 305 cacctcctgctg 316
||||||||||||
Sbjct: 505 cacctcctgctg 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_g04.g1 MSMg01no232_g04.g1 CHROMAT_FILE:
MSMg01no232_g04.g1 PHD_FILE: MSMg01no232_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:52 2005
(285 letters)
>mm_chr12_35565019_35565703
Length = 685
Score = 528 bits (273), Expect = e-154
Identities = 282/285 (98%)
Strand = Plus / Minus
Query: 1 tctcccattggtgaggtttgcacctgggtacctttcaggaatgtaagacttaggagaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctcccattggtgaggtttgcacctgggtacctttcaggaatgtaagacttaggagaaac 426
Query: 61 aaacccctgtgggcatttgcttgtgttataggctttctgtgtctgaaatccttactaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaacccctgtgggcatttgcttgtgttataggctttctgtgtctgaaatccttactaagt 366
Query: 121 attgattgtgatttcatctgttcccagaacatcttctctgttggagagtgcgttgggctc 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 attgattatgatttcatctgttcccagaacatcttctctgttggagagtgcgttgggctc 306
Query: 181 tgagaatacggagaaagaatcagtatgtcccatgtatctgtgaaacagccgaatgggaga 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgagaatacggaaaaagaatcagtatgtcccatgtatctgtgaaacagccgaatgggaga 246
Query: 241 gataggtattagtgatgacccaactaattacttaactagtaagaa 285
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 245 gataggtattagtgatgacccaactaattacttaattagtaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
