BAC Information

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BAC

Clone NameMSMg01-233B12
Chromosome12 (Build37)
Map Location 28,637,758 - 28,638,067
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233B12.T7 (MSMg01no233_b12.b1)MSMg01-233B12.TJ (MSMg01no233_b12.g1)
ACCAG399400AG399401
length711737
length of high quality
(start - end)
317 (46 - 362)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no233_b12.b1 PHD_FILE: MSMg01no233_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:44 2005CHROMAT_FILE: MSMg01no233_b12.g1 PHD_FILE: MSMg01no233_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTCTAATCATATTATGATATCACAAGATTAAGATGGCACTTTT
AAATATAGTGCCAAATAGAAATGGCTGGAAATTAAAGACTTTTGATATTG
ATTGATAATTTACAATGCCAAAACCTTCCCCTGTTTGTATAGGGTTTCTG
ATTTACTTTGTAATCTTCCTCTTTCTGTCTCTGTGTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCCCTCTCTCTCCTTTTTCCTGTGAATAATGTAACATGAGCATACAC
ACTTGAGGAACTGTTTTTATACTACCCCCCCCCGAGCATAAAGATCAAGT
GCTCTCATTGAATTTTGCCCCCCCACATGTATGAAAACTAGTGTTCACTA
GCCACCGGACTGGTTTACAGACCTTCCCACGCAAGGATTCTTTGCCTTGT
CTTTAATAGACTCTAGCATATGTCCAGCCAATCATTACGAGAATCCATTG
CTCAGTGCACACATCACCTTAATCCAGAAGGTCAGGAGAACACTGATATA
TTTTTGGTCATGGTCACACACGCACCCGCTGCCCCAAGCCCCACTAAATT
ATATATCGCTATCTTGCCGTACTTAACCACTTTACTGAGAAAATACCTCA
CCCATCGATAA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCAGTAGACATTTTCTGGGAA
GGGAGAATTATTCTTTGTTGAGGATGTGGCCACTGGTAGAATTCCCATGC
TCTAGTGAATGGTCCCTGAGCCATGCAGGTAAGGCAACACTAAGAGACCA
GTGAGTAATCAAAAATGGAGAAAGACATGAAATTGTGAGAAGCCAAAATT
GGGTGATATTTGGGAGAATTGGAAGGGAAATGGAGGTAGATAATGAACAT
ATTTCATTCTATGCAAGTATGAAATTCTCAAGTACAAAGAAAGATAAAAA
AGAATCATGAATATTTTTCAGGTGACACCACATGCTGGCGAGGATGTGGA
GAAAGAGGGATACTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACC
ACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATTGGAGATAGTACTAC
CAGAAGATCCAGCGATACCCCTCCTGGGCATTTACCCAGAAGTTCCAACT
TGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTACTTGTATT
TGCCAGAAGCTGGGAAGAACCCAGATGTCCCTCAACAGAGGAATGGATAC
CGAAAATGTGTTACATTTACACAATGCAGTACTACTCAGCTATTAANACC
GCCAATTTTTTGAAATTTTTAGACAAATGGATGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_b12.b1 MSMg01no233_b12.b1 CHROMAT_FILE:
MSMg01no233_b12.b1 PHD_FILE: MSMg01no233_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:44 2005
         (317 letters)



>mm_chr12_28637554_28638271
          Length = 718

 Score =  569 bits (294), Expect = e-166
 Identities = 308/314 (98%), Gaps = 5/314 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctctaa-tcatattatgatatcacaagattaagatggcacttttaaatatag 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctctaaatcatattatgatatcacaagattaagatggcacttttaaatatag 264

                                                                       
Query: 64  tgccaaatagaaatggctggaaattaaagacttttgatattgattgataatttacaatgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgccaaatagaaatggctggaaattaaagacttttgatattgattgataatttacaatgc 324

                                                                       
Query: 124 caaaaccttcccctgtttgtatagggtttctgatttactttgtaatcttcctctttctgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaaccttcccctgtttgtatagggtttctgatttactttgtaatcttcctctttctgt 384

                                                                       
Query: 184 ctctgtgtctctctctctctctctctctctctctctctctctctctctctctctctctct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctgtgtctctctctctctctctctctctctctctctctctctctctctctctctctct 444

                                                                       
Query: 244 ctctctctctctctctccctctctctcctttttcctgtgaataatgtaacatgagcatac 303
           ||||||||||||| ||   |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 ctctctctctctc-ct---tctctctcctttttccagtgaataatgtaacatgagcatac 500

                         
Query: 304 acacttgaggaact 317
           ||||||||||||||
Sbjct: 501 acacttgaggaact 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)