BAC Information

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BAC

Clone NameMSMg01-233D07
Chromosome12 (Build37)
Map Location 35,584,869 - 35,585,182
singlet/doubletsinglet
Overlap genenone
Upstream geneFerd3l, Twist1, Hdac9, 4921508M14Rik
Downstream genePrps1l1, Snx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233D07.T7 (MSMg01no233_d07.b1)MSMg01-233D07.TJ (MSMg01no233_d07.g1)
ACCAG399483AG399484
length743751
length of high quality
(start - end)
318 (46 - 363)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no233_d07.b1 PHD_FILE: MSMg01no233_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:52 2005CHROMAT_FILE: MSMg01no233_d07.g1 PHD_FILE: MSMg01no233_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAATGTCCCCCGATTTAACTTAATAGTAGAAATCTACATACAGG
AGGGGGGGGAATGGACTCGGAGCTTTTGATTTTAACCAAAATGGAAAGTT
CAAATAAAAATTGAACAGCCTCCACCTATTCTTACTTTTAGATCTAAGCA
AGACCTATAATCTGTGCTGCCTGCTGGGAAAATCAAACAAAGCATGATGC
AGCGTCCGCTCTCACTCGGATCTTTAACCAGCATCTTCCAGTGTGCACTT
CTCTCAAGGTGAATGACGGACCCCAAGAGCAGTGACAGCAGAGGCACACT
TCAATGTGTGCACTTATAGTTTCCCCTGCCCCCCTCACTTACTGCTGTGA
GTAGAGAATGTGAGCTCACACGACAGGCTCTGATATCAGACCTGCATTCA
ATTTCTGATGCCACCCATAGTTGAATGACCCCGGGCAAGGTAGTTAACCT
TTCAAACTCTCCCTTTACCTGGAGGTGGGAAAGAAAGCAGCAGAAGAAAA
TGTGGACCAGGCTGCCAGAGTACAGGTCTGGATTTGATAACATTGCCCCA
GAAAAATGAATAGGCTGTGTTCCATAGGCCTGAAACGCCTATAAAGCACA
AGTACACCTACTTGTCCTTGGGCCATAGACTGTATGGTGACTCCAAGTGC
CTCTGCGGTCTGTTTTCTCCCGACAAAAAAATTAGAAGGCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGGAGCACCCTTGAGCTAGGC
TTGCTTATGTTTTTTTTTTTTTAATTTTGATTTTGTTTTGTTTTGTTTCG
AGATTTATGGCTGAAAAGAAAAGTTGGCTGACTGCAGAGGCCTGGTAGCA
GCATTGCCTGGTGAGTGGTCTGCTCTGGAGTAGTTGTGGAGTTCAGATTC
CAACCTCACTGCTCGTTGACTGTGCTCTTTTGAGAATGACTCAACTCTGT
GCACAGGTTCCTTTATTTGTAGGATGGGAATTATAATATAATGCTCTGGG
AACTTTTTTCTTTTTTTATGCACCCCCCCACCCCACTGTAAGTGTGTGGA
CTATTGCCTCTCCCACAGCAAGCATCCATGACAAGATGTACGATTTCATC
ATAAACAGCAGGAAACTGCTAGGCAAGCTGACTTAATGAATGAGGCTCAA
TAGCAAAGTACATGGAGTGAGCGAAGGCGGTGTAACCATGTAGAAATACC
TAGGGGGAGACGGTGTGCCAGGTTTGCCTGTTCTGCTGCGGTTTGAGGTA
GTTGGAATACCGGAGTATTACTGATGTTAAAACTACCACAAGGGTAAACG
TATGGAGAACCAAGGGTACCGGTAAAACAAAGTGGGTCCTTCTCCTTCTC
TGGCCCATTGGTCACGCCCCACTTGACATACTCTTTCTTGTGTATTGGCA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_d07.b1 MSMg01no233_d07.b1 CHROMAT_FILE:
MSMg01no233_d07.b1 PHD_FILE: MSMg01no233_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:52 2005
         (318 letters)



>mm_chr12_35584665_35585382
          Length = 718

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataatgtcccccgatttaacttaatagtagaaatctacatacaggagggggggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataatgtcccccgatttaacttaatagtagaaatctacatacaggagggggggg 264

                                                                       
Query: 65  aatggactcggagcttttgattttaaccaaaatggaaagttcaaataaaaattgaacagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatggactcggagcttttgattttaaccaaaatggaaagttcaaataaaaattgaacagc 324

                                                                       
Query: 125 ctccacctattcttacttttagatctaagcaagacctataatctgtgctgcctgctggga 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 ctccacctattcttacttttagatctaagcgagacctataatctgtgctgcctgctggga 384

                                                                       
Query: 185 aaatcaaacaaagcatgatgcagcgtccgctctcactcggatctttaaccagcatcttcc 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 385 aaatcaaacaaagcatgatgcagcgtccgctctcacttggatctttaaccaacatcttcc 444

                                                                       
Query: 245 agtgtgcacttctctcaaggtgaatgacggaccccaagagcagtgacagcagaggcacac 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 agtgtgcacttctctcaaggtgaatgagggaccccaagagcagtgacagcagaggcacac 504

                         
Query: 305 ttcaatgtgtgcac 318
           ||||||||||||||
Sbjct: 505 ttcaatgtgtgcac 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)